Table 2

Selected genes related to carbohydrate (CHO) synthesis metabolism, storage and mobilization

Gene description

No. Isotigs


Starch synthase I

3

Starch synthase II

7

Starch synthase III

1

Starch synthase V

3

Starch synthase VI

1

Granule-bound starch synthase I

2

Starch ramifying enzyme I

5

Starch ramifying enzyme II

1

Starch phosphorylase I

1

Starch phosphorylase H

4

Pullulanase

1

Iso-amylase II

2

Iso-amylase III

1

SnRK1 (SNF1-Related Protein Kinase-1)

2

SNF4 (Sucrose non-fermenting-4)

1

Glucose-6-P/phosphate transporter

5

Phosphoenol pyruvate/phosphate transporter

8

Triose P/phosphate transporter

8

AGPase small subunit

1

AGPase large subunit

3

Sucrose synthase

7

Invertase (vacuolar)

4

Invertase (neutral/alkaline)

14

Invertase (cell wall)

1

Invertase inhibitors/PMEI

7

P-glucomutase

10


The genes listed were identified in the GS-FLX 454 and GS-FLXTM pyrosequencing of A. hypochondriacus and could be potentially involved in CHO re-localization associated with tolerance to defoliation by insect herbivory or mechanical damage.

Délano-Frier et al. BMC Genomics 2011 12:363   doi:10.1186/1471-2164-12-363

Open Data