Open Access Highly Accessed Research article

Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

John P Délano-Frier1*, Hamlet Avilés-Arnaut1, Kena Casarrubias-Castillo1, Gabriela Casique-Arroyo1, Paula A Castrillón-Arbeláez1, Luis Herrera-Estrella2, Julio Massange-Sánchez1, Norma A Martínez-Gallardo1, Fannie I Parra-Cota1, Erandi Vargas-Ortiz1 and María G Estrada-Hernández13

Author Affiliations

1 Unidad de Biotecnología e Ingeniería Genética de Plantas, (Cinvestav-Unidad Irapuato) Km 9.6 del Libramiento Norte Carretera Irapuato-León. Apartado Postal 629, C.P. 36821, Irapuato, Gto., México

2 Laboratorio Nacional de Génomica para la Biodiversidad, Km 9.6 del Libramiento Norte Carretera Irapuato-León. Apartado Postal 629, C.P. 36821, Irapuato, Gto., México

3 Department of Entomology, College of Agricultural Sciences. Penn State University, University Park, PA 16802, USA

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BMC Genomics 2011, 12:363  doi:10.1186/1471-2164-12-363

Published: 13 July 2011

Additional files

Additional file 1:

Functional annotation of clean GS-FLX 454 and GS FLXTM contigs/isotigs by comparison to the PFAM database.

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Additional file 2:

Transcripts associated with jasmonic acid-related responses identified in A. hypochondriacus.

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Additional file 3:

Transcripts associated with responses to bacterial infection identified in A. hypochondriacus.

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Additional file 4:

Transcripts associated with the incompatible plant-pathogen interaction identified in A. hypochondriacus.

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Additional file 5:

Annotated (Uniref 100) homologous transcripts in A. hypochondriacus and A. tuberculatus.

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Additional file 6:

Digital expression data; total contigs/isotigs that were differentially expressed in response to (a)biotic stress.

Format: XLS Size: 550KB Download file

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Additional file 7:

Digital expression data; total contigs/isotigs having a known function that were differentially expressed in response to (a)biotic stress.

Format: XLS Size: 183KB Download file

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Additional file 8:

Digital expression data; total contigs/isotigs having a known function that were differentially expressed in stems.

Format: XLS Size: 38KB Download file

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Open Data