Total CDSs identified in the genomes of Xcc strains 8004 and ATCC33913. (A) The location of all putative new CDSs relative to existing neighbor CDSs on the chromosome of Xcc strain 8004 has been classified into four groups, indicated by I, II, III, and IV respectively on the left. Group I indicates intergenic regions on the coding strand; II indicates intragenic regions on the coding strand, CDSs are partially or fully overlapped with annotated CDSs, but they are in different reading frames; III indicates intergenic regions on the complementary strand; and IV indicates intragenic regions on the complementary strand, CDSs are partially or fully overlapped with annotated CDSs, but they are in different reading frames. Below the relative localization, the length distribution of the putative new CDSs is given in base pairs (BP). Numbers inside the brackets indicate the number of CDSs. (B) A VENN diagram showing the overlapping of the CDSs predicted by GLIMMER, GeneMark, ZCURVE, respectively. Numbers inside the brackets indicate the number of the CDSs that have been confirmed by extrinsic evidence and/or transcriptional analysis.
Zhou et al. BMC Genomics 2011 12:359 doi:10.1186/1471-2164-12-359