Table 3

Number of MS/MS spectra assigned to different peptide sequences by algorithms

Algorithm

Number of

assigned

spectra

Assigned to

different

peptides

by Mascot

Assigned to

different

peptides

by OMSSA

Assigned to

different

peptides

by X! Tandem

Assigned to

different

peptides

by InsPecT


Mascot

9410

87 (0.92%)

134 (1.42%)

77 (0.82%)

132 (1.40%)

OMSSA

8531

128 (1.50%)

64 (0.75%)

77 (0.90%)

137 (1.61%)

X! Tandem

8820

76 (0.86%)

76 (0.86%)

26 (0.29%)

116 (1.32%)

InsPecT

8832

132 (1.49%)

134 (1.52%)

116 (1.31%)

93 (1.05%)


Chang and Muddiman BMC Genomics 2011 12:358   doi:10.1186/1471-2164-12-358

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