Table 1

Number of identified peptides and proteins by algorithms with a FDR < 2%

Algorithm

Threshold

Number of

Identified

Peptides

MS/MS

FDR (%)

Number of

Identified

RefSeq Proteins

Number of

Identified

Splice Variants


Mascot

E-value < 0.001

2731

1.88

747

21

OMSSA

E-value < 0.09

2407

1.89

745

20

X! Tandem

E-value < 0.04

2682

1.76

831

36

InsPecT

p-value < 0.02

2563

1.91

738

33


Chang and Muddiman BMC Genomics 2011 12:358   doi:10.1186/1471-2164-12-358

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