Table 1

Alfalfa sequence length distribution pre-and post-assembly

Pre-assembly

Chilean

Wisfal

Combined


Total base count (bp)

57,563,286

67,698,210

125,261,496

Sequence count

155,120

177,871

332,991


100-200 bp

13,881

10,380

24,261

200-300 bp

23,360

22,388

45,748

300-400 bp

40,842

55,262

96,104

400-500 bp

65,222

79,475

144,697

500-600 bp

11,806

10,362

22,168

600-700 bp

9

4

13


Minimum length (bp)

100

100

100

Maximum length (bp)

621

636

636

Average length (bp)

374

382

379


Post-assembly

Chilean

Wisfal

Combined


Total base count (bp)

18,581,045

20,813,330

29,353,134

TC count

14,815

17,178

24,144

Singleton count

22,918

22,990

30,072


100-500 bp

34,794

25,574

26,941

501-1000 bp

14,445

9,940

10,385

1001-1500 bp

3,174

1,573

1,976

1501-2000 bp

1,155

454

604

> 2000 bp

648

192

262


Minimum length (bp)

100

100

100

Maximum length (bp)

4,974

5,124

6662

Average length (bp)

492

518

541


Han et al. BMC Genomics 2011 12:350   doi:10.1186/1471-2164-12-350

Open Data