Phylogenetic analyses for sections of the duplicated mt genome region. ML, GTR+Γ+I-model of sequence evolution. Datasets are: (A) A. waldeni, section with high similarity between paralogues within individuals (=region of inferred recombination, white in Figure 1B) (B) A. waldeni, section with high similarity between orthologues across individuals (putative Replication Fork Barrier (RFB) region, grey in Figure 1B) (C) P. panini, region of inferred recombination (white in Figure 1C) (D) P. panini, putative RFB region (grey in Figure 1C). Roman letters (I, II) indicate CRI vs. CRII copies of single individuals. Aw, Aceros waldeni; Pp, Penelopides panini.
Sammler et al. BMC Genomics 2011 12:35 doi:10.1186/1471-2164-12-35