Table 1

Variant Summary

Bison

Zebu

Taurine


Heterozygous SNPs

2,426

3,890

2,525


Fixed differences

8,635

1,634

1,329


Total differences

11,061 (0.45%)

5,524 (0.23%)

3,854 (0.16%)


Total genotyped bases

2,447,500

2,395,651

2,306,566


dbSNP position matches

483 (4.37%)

594 (10.75%)

545 (14.14%)


dbSNP allele mismatches

10

4

1


For each individual, total consensus bases different from the reference, for heterozygous SNPs, fixed differences, and concordance with 1.8 million entries in NCBI's dbSNP database. Total differences from the reference are also given as a percentage of total genotyped bases. dbSNP position matches are also given as a percentage of total differences. dbSNP allele mismatches give the number of alleles that differed from a dbSNP allele while matching its position; for example, in the bison, of the 483 positions matching SNPs in dbSNP, 10 showed alleles different than those listed at dbSNP.

Cosart et al. BMC Genomics 2011 12:347   doi:10.1186/1471-2164-12-347

Open Data