Table 2

Genome-wide distribution of RsaI repeat fragments and their homologies with SINE and LINEs

S.No.

Sequence ID

GC level

Type of Elements

Subclass

Position of repeat in sequence

Length occupied (bp)

Percentage of the sequence in the buffalo genome


1.

pDp1

35.46

LINE2

L2

34-220

501

37.64


LINE1

L1MEc

222-722

187

14.05


RTE

BovB

730-785

532

39.97


BTLTR

786-855


BovB

856-1331


2.

pDp2

38.25

LINE 1

L1MC1s

9-651

643

98.77


3.

pDp3

39.47

LTR Elements (ERV_class I)

MER67C

7-212

206

34.16


4.

pDp4

30.68

SINE

BovB

1-159

44

12.98


LINE (RTE)

BovA

160-203

159

46.90


Low complexity

AT rich

245-310

66

19.47


Pathak and Ali BMC Genomics 2011 12:338   doi:10.1186/1471-2164-12-338

Open Data