Table 2

Categorization of P. tricornutum small RNAs.

PT1

PT2

PT3


Category

Unique sRNA

Percent (%)

Total sRNA

Percent (%)

Unique sRNA

Percent (%)

Total sRNA

Percent (%)

Unique sRNA

Percent (%)

Total sRNA

Percent (%)


Total

718770

100%

8924476

100%

596498

100%

5609466

100%

672323

100%

6982282

100%


Exon antisense

6399

0.89%

10386

0.12%

12995

2.18%

21742

0.39%

16265

2.42%

29367

0.42%


Exon sense

132234

18.40%

709873

7.95%

157692

26.44%

491026

8.75%

126953

18.88%

468933

6.72%


Intron antisense

738

0.10%

3668

0.04%

1054

0.18%

6759

0.12%

1331

0.20%

5795

0.08%


Intron sense

3244

0.45%

10084

0.11%

3334

0.56%

14835

0.26%

3773

0.56%

28637

0.41%


miRNA

3660

0.51%

36409

0.41%

2821

0.47%

36511

0.65%

3573

0.53%

44646

0.64%


rRNA

187636

26.11%

5580308

62.53%

101013

16.93%

2708557

48.29%

129970

19.33%

3837474

54.96%


siRNA

499

0.07%

1206

0.01%

2032

0.34%

6135

0.11%

2483

0.37%

7836

0.11%


snRNA

395

0.05%

1769

0.02%

358

0.06%

1843

0.03%

384

0.06%

3034

0.04%


snoRNA

147

0.02%

603

0.01%

130

0.02%

858

0.02%

156

0.02%

1381

0.02%


tRNA

20630

2.87%

798584

8.95%

13200

2.21%

445663

7.94%

17783

2.65%

703652

10.08%


non-annotateda

363188

50.53%

1771586

19.85%

301869

50.61%

1875537

33.44%

369652

54.98%

1851527

26.52%


aNot annotated sRNAs.

Huang et al. BMC Genomics 2011 12:337   doi:10.1186/1471-2164-12-337

Open Data