Open Access Highly Accessed Research article

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation

Britt L Flaherty1, F Van Nieuwerburgh2, Steven R Head3 and James W Golden1*

Author Affiliations

1 Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093-0116, USA

2 Laboratory of Pharmaceutical Biotechnology, Ghent University, Harelbekestraat 72, 9000 Ghent, Belgium

3 Genomics Core Facility, The Scripps Research Institute, La Jolla, CA 92037, USA

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BMC Genomics 2011, 12:332  doi:10.1186/1471-2164-12-332

Published: 28 June 2011

Additional files

Additional file 1:

Chromosome RNA-seq data. Chromosome RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 1.8MB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 2:

Alpha plasmid RNA-seq data. Alpha plasmid RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 108KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Beta plasmid RNA-seq data. Beta plasmid RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 63KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Gamma plasmid RNA-seq data. Gamma plasmid RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 39KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Delta plasmid RNA-seq data. Delta plasmid RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 34KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Epsilon plasmid RNA-seq data. Epsilon plasmid RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 7:

Zeta plasmid RNA-seq data. Zeta plasmid RNA-seq data for Anabaena PCC 7120 at 0, 6, 12, and 21 hours after nitrogen step-down.

Format: XLS Size: 15KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8:

RPKM heat map data. Change in RPKM data for Anabaena PCC 7120 from 0 to 6, 12, and 21 hours after nitrogen step-down used to prepare heat map.

Format: GCT Size: 198KB Download file

Open Data