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Chromatin structure characteristics of pre-miRNA genomic sequences

Shijia Zhu, Qinghua Jiang, Guohua Wang, Bo Liu, Mingxiang Teng and Yadong Wang*

Author Affiliations

Center for Biomedical Informatics, School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, 150001, China

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BMC Genomics 2011, 12:329  doi:10.1186/1471-2164-12-329

Published: 25 June 2011

Additional files

Additional file 1:

The percentage of miRNAs with different levels of nucleosome occupancy. The X axis represents the mean value of nucleosome occupancy in a 400-nt window surrounding the center of pre-miRNA genomic sequence. The y axis represents the percentage of miRNAs with corresponding nucleosome occupancy.

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Additional file 2:

A detailed annotation for each miRNA together with corresponding expression profile and nucleosome occupancy. It provides miRNA group annotation (intronic, intergenic, and exonic miRNAs), mature expression profiles, predicted promoters as well as the mean nucleosome occupancy within a 400-nt window surrounding the center of each pre-miRNA genomic sequence. "noData" represents that no data is available for this item. "unidentified" represents that the promoter for this miRNA is not identified.

Format: XLS Size: 294KB Download file

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Open Data