Table 1

Characteristics of the INRA RT rep1.0 database.

Number of elements

Percentage of sequence

Number of elements

Percentage of sequence


Class I elements

Class II elements


LTR retrotransposons

DNA

1

0,05

LTR/DIRS1

2

0,02

DNA/Harbinger

2

0,02

LTR/Gypsy

21

1,68

DNA/hAT

9

0,27

Non-LTR retrotransposons

DNA/hAT-Charlie

5

0,26

LINE

1

0,29

DNA/hAT-Tag1

1

0,05

LINE/I

1

0,01

DNA/hAT-Tip100

1

0,01

LINE/Jockey

3

0,05

DNA/Helitron

1

0,01

LINE/L1

6

0,14

DNA/Maverick

1

0,01

LINE/L2

19

2,18

DNA/Tc1

11

4,26

LINE/Penelope

1

0,05

DNA/TcMar-Tc1

46

24,51

LINE/Rex1

6

3,03

DNA/TcMar-Tc2

1

0,01

SINE

5

1,09

Others elements

SINE/Deu

5

0,23

Simple_repeat

22

1,19

SINE/tRNA-Lys

1

0,01

rRNA

3

0,11

SINE/5S

1

0,01

Satellite

2

0,06

SINE?

8

0,37

Unknown elements

549

19,19


Columns 1 and 4 show the name of the repeat elements. Columns 2 and 5 provide the number of repeats elements in the INRA RT rep1.0 generated in this work. Columns 3 and 6 correspond to the percentage of total base pairs masked by the corresponding repeat element.

Genet et al. BMC Genomics 2011 12:314   doi:10.1186/1471-2164-12-314

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