Table 3

Data sources

Chemistry

Name

DNA source

SNP calling software

References


Sanger

Assembly

Animal 17573 ♀

SNPdetector

Gibbs, et al. (2007) [23], Wheeler (pers. comm.)


Sanger

ENCODE

47 pooled individuals

SNPdetector

Hernandez, et al. (2007) [24]


SOLiD

17573 fragment

Animal 17573 ♀

Corona_lite


SOLiD

17573 mate-pair

Animal 17573 ♀

Corona_lite


SOLiD

r1766

Animal r1766 ♀

Corona_lite


SOLiD

r02120

Animal r02120 ♂

Corona_lite


454

Sub-species comparison

16 pooled individuals

AtlasSNP

Gibbs, et al. (2007) [23]


454

MamuSNP

~7 pooled individuals

Unknown

Malhi, et al. (2007) [25], http://mamusnp.ucdavis.edu/query.php webcite[44]


unknown

dbSNP/MonkeySNP

Unknown, >30 estimated

Unknown

http://monkeysnp.ohsu.edu/snp/ webcite[45], http://www.ncbi.nlm.nih.gov/projects/SNP/ webcite[16]


Each data source is displayed with the appropriate chemistry used, DNA source (if known) and SNP calling software.

Fawcett et al. BMC Genomics 2011 12:311   doi:10.1186/1471-2164-12-311

Open Data