Open Access Highly Accessed Research article

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

Lorenzo Barchi1,2, Sergio Lanteri1, Ezio Portis1*, Alberto Acquadro1, Giampiero Valè3, Laura Toppino2 and Giuseppe L Rotino2

1 DIVAPRA Plant Genetics and Breeding, University of Torino, 10095 Grugliasco, Torino, Italy

2 CRA-ORL Research Unit for Vegetable Crops, 26836 Montanaso Lombardo, Lodi, Italy

3 CRA-GPG Genomic Research Centre, 29017 Fiorenzuola d'Arda, Piacenza, Italy

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BMC Genomics 2011, 12:304 doi:10.1186/1471-2164-12-304

Published: 10 June 2011

Additional files

Additional file 1:

SM-I dataset. The zip file contains 5 files (1a-1e): 1a: "add_file_1a_SM-I.fas" (file format: .txt - fasta file); 1b: "add_file_1b_contigs_parents_SM-I.txt" (file format: .txt - fasta file); 1c: "add_file_1c_singlets parent 67_3.txt" (file format: .txt - fasta file); 1d: "add_file_1d_singlets parent 305E40.txt" (file format: .txt - fasta file); 1e: "add_file_1e_contigs_parents_SM-I.ace" (file format: .ace; the ACE viewer "Tablet" is available at http://bioinf.scri.ac.uk/tablet webcite).

Format: ZIP Size: 18.5MB Download file

Open Data

Additional file 2:

SM-I dataset annotation.

Format: XLSX Size: 2.7MB Download file

Open Data

Additional file 3:

SNP dataset information.

Format: XLSX Size: 1.1MB Download file

Open Data

Additional file 4:

SSR statistics and primer pairs designed.

Format: XLSX Size: 423KB Download file

Open Data