Table 2

Comparison of DNA methylation levels with gene expression levels.

Gene name

Symbol

Chr. no

Expression level

Methylation level

Gene ID


Matrix metalloproteinase 14 (membrane-inserted) alpha

mmp14a

7

ENSDARG00000002235

Histidyl-tRNA synthetase

hars

14

ENSDARG00000003693

Tubulin, alpha 8 like 4

tuba8l4

6

ENSDARG00000006260

E2F transcription factor 6

e2f6

20

ENSDARG00000008119

Acetoacetyl-CoA synthetase

aacs

5

ENSDARG00000012468

Nucleophosmin 1

npm1

10

ENSDARG00000014329

Cell division protein kinase 8 (probe 54)

cdk8

24

ENSDARG00000016496

Cell division protein kinase 8 (probes 21, 31)

cdk8

24

ENSDARG00000016496

Hepatoma-derived growth factor-related protein 2

hdgfrp2

22

ENSDARG00000019530

RAB2A, member RAS oncogene family

rab2

2

ENSDARG00000020261

LIM domain containing preferred translocation partner in lipoma

lpp

6

ENSDARG00000023578

Insulin-like growth factor binding protein 5a

igfbp5b

9

ENSDARG00000025348

Mitogen-activated protein kinase 1

mapk1

5

ENSDARG00000027552

Cancer susceptibility candidate gene 3 protein homolog

casc3

3

ENSDARG00000029911

Hnrpa0l protein

hnrpa0l

14

ENSDARG00000036161

Cyclin T2

ccnt2

9

ENSDARG00000036685

Proliferating cell nuclear antigen

pcna

10

ENSDARG00000054155

Ret proto-oncogene (probes 16, 19)

ret

13

ENSDARG00000055305

Ret proto-oncogene (probes 20, 24)

ret

13

ENSDARG00000055305

Integrin-linked kinase (probes 8, 1)

ilk

10

ENSDARG00000056964

Integrin-linked kinase (probes 6)

ilk

10

ENSDARG00000056964

Novel protein similar to vertebrate threonyl-tRNA synthetase

tars

18

ENSDARG00000075429

Ribonuclease inhibitor 1

rnh1

22

ENSDARG00000078234

Calpain 2, (m/II) large subunit, like

capn2

22

ENSDARG00000034211

Synaptopodin-2

synp02

7

ENSDARG00000079675


Genes with both significantly altered gene expression levels and DNA methylation levels (> 1.5 fold) (expression level: ↑ up regulated, ↓ down regulated; methylation level: ↑ hypermethylated, ↓ hypomethylated).

Mirbahai et al. BMC Genomics 2011 12:3   doi:10.1186/1471-2164-12-3

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