Table 3

Overrepresented motifs identified in promoters of genes involved in fatty acid synthesis, and oleosin and seed storage protein accumulation.

Sequence logo

Matrix ID

TF name

Pathway


MA1

WRI1

FA synthesis


MA5

DOF

FA synthesis


MA40

MYB

FA synthesis


MA70

GATA

FA synthesis


MA103

SORLIP5

FA synthesis


MA117

CBF (LEC1 L1L)

FA synthesis


MA97

B3-domain (ABI3/VP1)

SSP/Oleosoin


MA23

bZIP

SSP/Oleosoin


Refer to Additional File 4 for each matrix identifier (ID). The abbreviations of transcription factors (TF), promoter element, and pathway names are as follows: WRI1: WRINLKED 1; DOF: DNA binding with One Finger; SORLIP: Sequences Over-Represented in Light-Induced Promoter; CBF: CCAAT binding factor; bZIP: basic leucine zipper; FA: fatty acid; SSP: seed storage protein.

Peng and Weselake BMC Genomics 2011 12:286   doi:10.1186/1471-2164-12-286

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