Table 3 |
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Overrepresented motifs identified in promoters of genes involved in fatty acid synthesis, and oleosin and seed storage protein accumulation. |
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Sequence logo |
Matrix ID |
TF name |
Pathway |
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|
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MA1 |
WRI1 |
FA synthesis |
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|
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MA5 |
DOF |
FA synthesis |
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|
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MA40 |
MYB |
FA synthesis |
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|
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MA70 |
GATA |
FA synthesis |
|
|
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MA103 |
SORLIP5 |
FA synthesis |
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|
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MA117 |
CBF (LEC1 L1L) |
FA synthesis |
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|
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MA97 |
B3-domain (ABI3/VP1) |
SSP/Oleosoin |
|
|
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MA23 |
bZIP |
SSP/Oleosoin |
|
|
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Refer to Additional File 4 for each matrix identifier (ID). The abbreviations of transcription factors (TF), promoter element, and pathway names are as follows: WRI1: WRINLKED 1; DOF: DNA binding with One Finger; SORLIP: Sequences Over-Represented in Light-Induced Promoter; CBF: CCAAT binding factor; bZIP: basic leucine zipper; FA: fatty acid; SSP: seed storage protein. |
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Peng and Weselake BMC Genomics 2011 12:286 doi:10.1186/1471-2164-12-286 |
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