Table 3

Song-regulated targets of tgu-miR-2954-3p

Ensembl ID

Gene Symbol

EST

Gene Name


ENSTGUG00000001349

ELAVL2

CK313262

ELAV-like protein 2 (Hu-antigen B)(HuB)(ELAV-like neuronal protein 1)(Nervous system-specific RNA-binding protein Hel-N1)


ENSTGUG00000001404

LINGO2

DV957508

Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 Precursor (Leucine-rich repeat neuronal protein 6C)(Leucine-rich repeat neuronal protein 3)


ENSTGUG00000003073

TLK2

CK305975

Serine/threonine-protein kinase tousled-like 2 (EC 2.7.11.1)(Tousled-like kinase 2)(PKU-alpha)


ENSTGUG00000008207

BTG1

CK303273

Protein BTG1 (B-cell translocation gene 1 protein)


ENSTGUG00000008540

CHD2

DV958991

Chromodomain-helicase-DNA-binding protein 2 (CHD-2)(EC 3.6.1.)(ATP-dependent helicase CHD2)


ENSTGUG00000010181

XP_002196848.1

CK304764

crk-like protein (v-crk avian sarcoma virus CT10 oncogene homolog-like) (CRKL)


ENSTGUG00000010364

NEGR1

DV954047

Neuronal growth regulator 1 Precursor


ENSTGUG00000011700

HMGB1

CK314519

High mobility group protein B1 (High mobility group protein 1)(HMG-1)


We used TargetScan to find binding sites of tgu-miR-2954-3p on eight chicken genes and here are listed the information of their homologous genes in the zebra finch genome including Ensembl IDs, Gene Symbols, EST (Accession numbers of song-regulated EST identified in the previous microarray study) and Gene Names (or aliases in parenthesis).

Gunaratne et al. BMC Genomics 2011 12:277   doi:10.1186/1471-2164-12-277

Open Data