Figure 3.

Neighbor Joining, seven-gene, gaps-as-missing, and single-outgroup trees. A: Neighbor Joining topology for both 3 Mbp and 12 Mbp alignments; B: Most parsimonious tree from TNT based on seven gene loci, with boopstrap resampling frequencies below the branches; C: Most parsimonious tree from TNT when gaps in 3 Mbp alignment are treated as missing; D: Most parsimonious tree from TNT when C. psychrerythraea is the only outgroup taxon. Taxa with variable placement are highlighted to show topology differences in A, C, and D.

Dikow BMC Genomics 2011 12:237   doi:10.1186/1471-2164-12-237
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