Table 7

GO terms significantly over-represented, among genes differentially expressed, between Alberoni and Marghera samples, in both gills and digestive gland

DAVID analysis of digestive gland differential expressed genes


Category

Term

Count

p-value

F.E.


BP

GO:0007018~microtubule-based movement

4

0.014259

6.969072

GO:0007017~microtubule-based process

5

0.021639

4.35567

GO:0010033~response to organic substance

4

0.040861

4.878351

GO:0046686~response to cadmium ion

3

0.078833

6.097938

GO:0051597~response to methylmercury

3

0.078833

6.097938


MF

GO:0005856~cytoskeleton

11

0.008012

2.50387

GO:0015630~microtubule cytoskeleton

5

0.028246

4.021368

GO:0005874~microtubule

4

0.030885

5.361823

GO:0045259~proton-transporting ATP synthase complex

4

0.09956

3.446886


KP

dre04510:Focal adhesion

8

0.035313

2.421429

dre00982:Drug metabolism

4

0.042809

4.708333

dre00980:Metabolism of xenobiotics by cytochrome P450

4

0.042809

4.708333


DAVID analysis of gills differential expressed genes


Category

Term

Count

p-value

F.E.


BP

GO:0044267~cellular protein metabolic process

75

0.002721

1.314444

GO:0006412~translation

43

0.004311

1.463856

GO:0045333~cellular respiration

10

0.008891

2.490526

GO:0015980~energy derivation by oxidation of organic comp.

10

0.008891

2.490526

GO:0034645~cellular macromolecule biosynthetic process

54

0.01233

1.323979

GO:0019538~protein metabolic process

90

0.012991

1.209886

GO:0006091~generation of precursor metabolites and energy

18

0.037073

1.607094

GO:0006457~protein folding

13

0.046318

1.7576

GO:0010467~gene expression

56

0.063065

1.210009

GO:0044237~cellular metabolic process

125

0.063116

1.103545

GO:0009060~aerobic respiration

5

0.065749

2.9575


MF

GO:0003735~structural constituent of ribosome

38

4.49E-04

1.689704

GO:0005198~structural molecule activity

43

7.11E-04

1.593361

GO:0015078~hydrogen ion transmembrane transporter activity

14

0.035716

1.766618

GO:0016859~cis-trans isomerase activity

7

0.057275

2.334459

GO:0003755~peptidyl-prolyl cis-trans isomerase activity

7

0.057275

2.334459

GO:0008092~cytoskeletal protein binding

12

0.07344

1.697789

GO:0015075~ion transmembrane transporter activity

23

0.07676

1.394612

GO:0003924~GTPase activity

6

0.09088

2.334459


KP

dre03010:Ribosome

39

9.90E-07

2.003182

dre04260:Cardiac muscle contraction

13

0.007105

2.136727

dre00630:Glyoxylate and dicarboxylate metabolism

4

0.094374

3.287273


Details about "Biological process", "Molecular function" and "KEGG pathways" represented by at least 2 genes up regulated in each tissue.

Milan et al. BMC Genomics 2011 12:234   doi:10.1186/1471-2164-12-234

Open Data