Table 4

Biological Process (BP), Cellular Component (CC), KEGG pathways (KP) and Molecular Function (MF) significantly represented by at least 10 genes up-regulated in gills compared to digestive gland

Term

Count

p-value

F.E.


KP

dre04510:Focal adhesion

20

1.05E-04

2.31

dre04540:Gap junction

8

6.50E-03

2.93

dre04310:Wnt signaling pathway

13

1.22E-02

2.02

dre04210:Apoptosis

8

1.24E-02

2.69

dre04114:Oocyte meiosis

9

1.48E-02

2.42

dre04621:NOD-like receptor signaling pathway

7

3.09E-02

2.57

dre04630:Jak-STAT signaling pathway

5

3.50E-02

3.36

dre04622:RIG-I-like receptor signaling pathway

6

4.50E-02

2.69

dre04620:Toll-like receptor signaling pathway

7

4.94E-02

2.35


BP

GO:0050794~regulation of cellular process

89

2.74E-04

1.35

GO:0034622~cellular macromolecular complex assembly

16

3.69E-04

2.41

GO:0065007~biological regulation

101

3.75E-04

1.31

GO:0050789~regulation of biological process

91

8.68E-04

1.31

GO:0007166~cell surface receptor linked signal transduction

22

1.16E-03

1.93

GO:0034621~cellular macromolecular complex subunit organization

16

1.87E-03

2.15

GO:0007017~microtubule-based process

11

2.48E-03

2.59

GO:0022607~cellular component assembly

20

4.27E-03

1.84

GO:0050896~response to stimulus

39

5.63E-03

1.47

GO:0042981~regulation of apoptosis

10

6.07E-03

2.51

GO:0065003~macromolecular complex assembly

16

6.68E-03

1.94

GO:0032501~multicellular organismal process

60

7.63E-03

1.32

GO:0009653~anatomical structure morphogenesis

28

9.94E-03

1.55

GO:0042592~homeostatic process

17

1.01E-02

1.83

GO:0001568~blood vessel development

10

1.07E-02

2.35

GO:0043067~regulation of programmed cell death

10

1.07E-02

2.35

GO:0010941~regulation of cell death

10

1.07E-02

2.35

GO:0001944~vasculature development

10

1.07E-02

2.35

GO:0044085~cellular component biogenesis

23

1.39E-02

1.60


CC

GO:0015630~microtubule cytoskeleton

11

0.005

2.423

GO:0044430~cytoskeletal part

14

0.033

1.747

GO:0005856~cytoskeleton

22

0.044

1.471


MF

GO:0003924~GTPase activity

11

5.20E-04

2.97

GO:0005515~protein binding

85

3.75E-03

1.28

GO:0003700~transcription factor activity

12

5.89E-03

2.26

GO:0019001~guanyl nucleotide binding

22

6.17E-03

1.73

GO:0005525~GTP binding

22

6.17E-03

1.73

GO:0032561~guanyl ribonucleotide binding

22

6.17E-03

1.73


Gene count, p-value and fold enrichment (F.E.) corresponding to each term are indicated.

Milan et al. BMC Genomics 2011 12:234   doi:10.1186/1471-2164-12-234

Open Data