Table 3

GO terms significantly represented among up-regulated genes in digestive gland compared to gills tissue

Term

Count

p-value

F.E.


KP

dre00982:Drug metabolism

8

3.9E-05

5.9

dre00980:Metabolism of xenobiotics by cytochrome P450

8

3.9E-05

5.9

dre00480:Glutathione metabolism

9

8.8E-04

3.7

dre04142:Lysosome

14

1.9E-03

2.4


BP

GO:0055114~oxidation reduction

39

6.4E-06

2.0

GO:0048468~cell development

15

6.7E-06

3.6

GO:0040008~regulation of growth

11

7.2E-06

4.7

GO:0001558~regulation of cell growth

10

3.2E-05

4.6

GO:0009308~amine metabolic process

17

4.2E-05

2.9

GO:0022008~neurogenesis

14

4.2E-05

3.3

GO:0030182~neuron differentiation

12

4.6E-05

3.8

GO:0048699~generation of neurons

13

8.2E-05

3.4

GO:0016052~carbohydrate catabolic process

13

2.3E-04

3.1

GO:0030154~cell differentiation

22

2.3E-04

2.2

GO:0048869~cellular developmental process

22

8.4E-04

2.1

GO:0005975~carbohydrate metabolic process

18

2.2E-03

2.1

GO:0007399~nervous system development

14

2.5E-03

2.4

GO:0006066~alcohol metabolic process

13

7.7E-03

2.2

GO:0009653~anatomical structure morphogenesis

20

1.1E-02

1.8

GO:0006508~proteolysis

29

1.2E-02

1.5

GO:0006629~lipid metabolic process

12

1.3E-02

2.2


CC

GO:0005576~extracellular region

20

1.13E-05

2.88

GO:0016021~integral to membrane

40

2.11E-05

1.85

GO:0031224~intrinsic to membrane

40

2.44E-05

1.84

GO:0016020~membrane

55

3.34E-05

1.57

GO:0044425~membrane part

42

0.001042

1.54


MF

GO:0030246~carbohydrate binding

29

2.55E-15

4.56

GO:0005529~sugar binding

21

2.06E-11

4.69

GO:0003824~catalytic activity

142

4.26E-06

1.29

GO:0016491~oxidoreductase activity

46

1.69E-05

1.81

GO:0005509~calcium ion binding

27

5.43E-05

2.18

GO:0008233~peptidase activity

30

5.02E-04

1.85

GO:0070011~peptidase activity, acting on L-amino acid peptides

29

5.42E-04

1.87

GO:0004175~endopeptidase activity

25

5.63E-04

1.99

GO:0004197~cysteine-type endopeptidase activity

11

1.10E-03

3.04

GO:0016787~hydrolase activity

59

2.99E-03

1.39

GO:0008234~cysteine-type peptidase activity

11

3.79E-03

2.66

GO:0004872~receptor activity

18

3.97E-03

2.01


Here are the Biological Process (BP), Cellular Component (CC) and Molecular Function (MF) represented by at least 10 genes. Significantly represented KEGG pathways (KP) are also reported. Gene count, p-value and fold enrichment (F.E.) corresponding to each term are indicated.

Milan et al. BMC Genomics 2011 12:234   doi:10.1186/1471-2164-12-234

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