Table 3 |
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|
GO terms significantly represented among up-regulated genes in digestive gland compared to gills tissue |
||||
|
Term |
Count |
p-value |
F.E. |
|
|
|
||||
|
KP |
dre00982:Drug metabolism |
8 |
3.9E-05 |
5.9 |
|
dre00980:Metabolism of xenobiotics by cytochrome P450 |
8 |
3.9E-05 |
5.9 |
|
|
dre00480:Glutathione metabolism |
9 |
8.8E-04 |
3.7 |
|
|
dre04142:Lysosome |
14 |
1.9E-03 |
2.4 |
|
|
|
||||
|
BP |
GO:0055114~oxidation reduction |
39 |
6.4E-06 |
2.0 |
|
GO:0048468~cell development |
15 |
6.7E-06 |
3.6 |
|
|
GO:0040008~regulation of growth |
11 |
7.2E-06 |
4.7 |
|
|
GO:0001558~regulation of cell growth |
10 |
3.2E-05 |
4.6 |
|
|
GO:0009308~amine metabolic process |
17 |
4.2E-05 |
2.9 |
|
|
GO:0022008~neurogenesis |
14 |
4.2E-05 |
3.3 |
|
|
GO:0030182~neuron differentiation |
12 |
4.6E-05 |
3.8 |
|
|
GO:0048699~generation of neurons |
13 |
8.2E-05 |
3.4 |
|
|
GO:0016052~carbohydrate catabolic process |
13 |
2.3E-04 |
3.1 |
|
|
GO:0030154~cell differentiation |
22 |
2.3E-04 |
2.2 |
|
|
GO:0048869~cellular developmental process |
22 |
8.4E-04 |
2.1 |
|
|
GO:0005975~carbohydrate metabolic process |
18 |
2.2E-03 |
2.1 |
|
|
GO:0007399~nervous system development |
14 |
2.5E-03 |
2.4 |
|
|
GO:0006066~alcohol metabolic process |
13 |
7.7E-03 |
2.2 |
|
|
GO:0009653~anatomical structure morphogenesis |
20 |
1.1E-02 |
1.8 |
|
|
GO:0006508~proteolysis |
29 |
1.2E-02 |
1.5 |
|
|
GO:0006629~lipid metabolic process |
12 |
1.3E-02 |
2.2 |
|
|
|
||||
|
CC |
GO:0005576~extracellular region |
20 |
1.13E-05 |
2.88 |
|
GO:0016021~integral to membrane |
40 |
2.11E-05 |
1.85 |
|
|
GO:0031224~intrinsic to membrane |
40 |
2.44E-05 |
1.84 |
|
|
GO:0016020~membrane |
55 |
3.34E-05 |
1.57 |
|
|
GO:0044425~membrane part |
42 |
0.001042 |
1.54 |
|
|
|
||||
|
MF |
GO:0030246~carbohydrate binding |
29 |
2.55E-15 |
4.56 |
|
GO:0005529~sugar binding |
21 |
2.06E-11 |
4.69 |
|
|
GO:0003824~catalytic activity |
142 |
4.26E-06 |
1.29 |
|
|
GO:0016491~oxidoreductase activity |
46 |
1.69E-05 |
1.81 |
|
|
GO:0005509~calcium ion binding |
27 |
5.43E-05 |
2.18 |
|
|
GO:0008233~peptidase activity |
30 |
5.02E-04 |
1.85 |
|
|
GO:0070011~peptidase activity, acting on L-amino acid peptides |
29 |
5.42E-04 |
1.87 |
|
|
GO:0004175~endopeptidase activity |
25 |
5.63E-04 |
1.99 |
|
|
GO:0004197~cysteine-type endopeptidase activity |
11 |
1.10E-03 |
3.04 |
|
|
GO:0016787~hydrolase activity |
59 |
2.99E-03 |
1.39 |
|
|
GO:0008234~cysteine-type peptidase activity |
11 |
3.79E-03 |
2.66 |
|
|
GO:0004872~receptor activity |
18 |
3.97E-03 |
2.01 |
|
|
|
||||
|
Here are the Biological Process (BP), Cellular Component (CC) and Molecular Function (MF) represented by at least 10 genes. Significantly represented KEGG pathways (KP) are also reported. Gene count, p-value and fold enrichment (F.E.) corresponding to each term are indicated. |
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|
Milan et al. BMC Genomics 2011 12:234 doi:10.1186/1471-2164-12-234 |
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