Additional file 1.
List of orthologues. List of the orthologues (2891 gene IDs) between S. cerevisiae and P. pastoris used for the direct comparison of the results of the transcriptional analysis. Orthology was determined using a reciprocal best hit strategy based on protein BLASTs (E-value cut-off < 10-5 and filtering for at least one high scoring segment > 50 amino acids with a similarity > 40%). 388 gene IDs passing the filters were excluded since they were missing either on the S. cerevisiae or on the P. pastoris microarrays.
Column A, P. pastoris gene IDs used in microarrays; column B, S. cerevisiae systematic names; column C, S. cerevisiae short gene names (corresponding to the protein names); column D, number of S. cerevisiae genes for which the P. pastoris protein was the best hit.
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Baumann et al. BMC Genomics 2011 12:218 doi:10.1186/1471-2164-12-218