Research article
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
1 Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, Oregon 97331, USA
2 Department of Botany, Oklahoma State University, 104 Life Sciences East, Stillwater, Oklahoma 74078, USA
3 The Academy of Natural Sciences, 1900 Benjamin Franklin Parkway, Philadelphia, Pennsylvania 19103, USA
4 Pacific Northwest Research Station, USDA Forest Service, 3200 SW Jefferson Way, Corvallis, Oregon 97331, USA
BMC Genomics 2011, 12:211 doi:10.1186/1471-2164-12-211
Published: 4 May 2011Additional files
Additional file 1:
Polymorphism detected among Illumina reads for the PhiX sequencing control. A graph showing the proportion of bases differing from the majority base in the Illumina PhiX sequencing control.
Format: PDF Size: 774KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
Primer sets designed using BatchPrimer3 for 184 nuclear microsatellite loci in Asclepias syriaca not tested for amplification success. A table of nuclear microsatellite locus primer sets, including predicted product size and repeat motif information.
Format: PDF Size: 143KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
List of GI numbers for 19,899 Catharanthus roseus ESTs downloaded from GenBank and assembled into unigenes. List of GenBank numbers for Catharanthus roseus ESTs used in this study.
Format: TXT Size: 194KB Download file
Additional file 4:
Asclepias syriaca mitochondrial genome contigs. FASTA file containing sequences of the assembled Asclepias syriaca mitochondrial genome contigs.
Format: FSA Size: 134KB Download file
Additional file 5:
Asclepias syriaca nuclear genome de novo assembly contigs. FASTA file containing sequences of the nuclear genome contigs from the Velvet de novo Asclepias syriaca genome assembly.
Format: FSA Size: 1.6MB Download file
