Open Access Research article

Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering

Shanaz A Ghandhi1, Anshu Sinha2, Marianthi Markatou34 and Sally A Amundson1*

Author Affiliations

1 Center for Radiological Research, Columbia University, VC11-215, 630 West 168th Street, New York, NY, 10032, USA

2 Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA

3 Department of Biostatistics, Columbia University, New York, NY 10032, USA

4 Department of Statistical Sciences, Cornell University, 301 Malott Hall, Ithaca, NY 14853-3801, USA

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BMC Genomics 2011, 12:2  doi:10.1186/1471-2164-12-2

Published: 4 January 2011

Additional files

Additional file 1:

Manually curated clustering, pdf file.

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Additional file 2:

STEM clustering on irradiation gene response, MS excel file.

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Additional file 3:

FBPA clustering on irradiation gene response, MS excel file.

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Additional file 4:

STEM clustering on bystander gene response, MS excel file.

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Additional file 5:

FBPA clustering on bystander gene response, MS excel file.

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Additional File 6:

Metallothionein expression levels in irradiated and bystander cells, pdf.

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Additional file 7:

Microarray data from irradiated and bystander cells, MS excel file.

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Additional file 8:

qRT-PCR data from irradiated and bystander cells, MS excel file.

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