Dot plots of Arabidopsis chromosome assemblies. Alignments of pseudomolecules are shown against the sequences of each of the Arabidopsis chromosomes; analyses using whole genome shotgun (WGS) sequencing (bottom half of each dot plot) and 3 Mbp pooled (Pooled) sequencing (top half of each dot plot) are both shown. Coverage combination of 15x linear + 5x paired was used for both analyses. Red dots and lines denote matching regions in the correct orientation, blue denotes reversed orientation. The associated assembly scores are also shown.
Haiminen et al. BMC Genomics 2011 12:194 doi:10.1186/1471-2164-12-194