Table 2

Summary of BES mapping

Number of BAC clones

Number of BES


Mate-pairs

29,046


Mapped

26,809

38,736


Paired endsa

3,133

6,266


Long BES pairsb

3,182

6,364


mate-reversec

267

534


Unmated

5,345

10,690


Singletone

14,882

14,882


Unmapped

2,237

4,474


a. Two ends (≤ 300 kb apart) derived from the same BAC clone were mapped to the same chromosome with the same orientation.

b. Two BES (>300 kb apart) in one BAC located in the same chromosome with the same orientation.

c. Two BES in one BAC located in the same chromosome with the different orientation.

d. Two ends from the same BAC were mapped to different chromosomes.

e. Only one end in carp BAC was aligned to zebrafish chromosome.

Xu et al. BMC Genomics 2011 12:188   doi:10.1186/1471-2164-12-188

Open Data