Table 3

Genetic loci sources and linkage mapping statistics

Marker Source

Inputa

Mapped

LOD4

LOD3

LOD2

LOD1

LOD0

% of Input


Rexroad et al. 2008 [16]

1180

1126b

396

62

57

43

568

95%

SNPs (OMS)

167

159

21

5

13

8

112

95%

OMY4000 (BES)

128

127

40

10

10

5

62

98%

Immune Genesc

10

9

3

0

0

0

6

90%

Total

1485

1421d

460

77

80

56

748

96%

Percent

100%

32%

5%

6%

4%

53%


a Loci that were genotyped and were informative for linkage analysis in the NCCCWA mapping panel.

b Twenty seven loci that were previously mapped to linkage groups in the genetic map version of Rexroad et al. (2008) were not linked to other loci in this version, and 29 loci that were previously genotyped but not linked were assigned to linkage groups in the current version.

c Microsatellites or SNPs isolated from immune response genes (Additional file 2, Table S2).

d Eighty eight duplicated loci were mapped to linkage groups in the current version (total number of markers was 1,333).

Palti et al. BMC Genomics 2011 12:180   doi:10.1186/1471-2164-12-180

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