Table 1

ARF gene family in Maize

Gene

Namea

ORF

length (bp)b

Deduced polypeptidec

Chr. Locusd

Genomic Locuse

ESTg

Physical

Blockh

Block Pairsi



Length (aa)

MW (kDa)

PI

BAC

GenBank Accessions,

DNA

Nearest

Markerf


ZmARF1

3261

1086

120.15

6.25

1.06

AC208531

HM004516

bnlg1057

CO533792

ZmARF2

2046

681

74.53

7.93

1.08

AC194848

HM004517

umc1096

BT060467

45-49

10La

ZmARF3

2451

816

90.85

6.38

2.01

AC191413

HM004518

umc2046

AY110452

68-82

4L

ZmARF4

2808

935

102.78

6.12

2.01

AC204518

HM004519

umc1622

EE039613

68-82

4L

ZmARF5

1542

513

55.44

6.40

2.03

AC200303

HM004520

umc1021

BT066632

68-82

4L

ZmARF6

1974

657

72.94

6.14

2.04

AC190503

HM004521

umc1089

BT067327

ZmARF7

2061

686

76.70

6.29

3.00

AC190684

HM004522

bnlg108

EC885481

ZmARF8

2124

707

75.35

7.10

3.01

AC184124

HM004523

phi049

EU965402

ZmARF9

2646

881

97.03

6.01

3.04

AC193407

HM004524

AI881370

EE037883

ZmARF10

2400

799

89.22

6.25

3.06

AC193433

HM004525

bnlg1176

BT055015

125-151

1L

ZmARF11

2067

688

74.98

7.28

3.07

AC210193

HM004526

pco114882

DR820421

125-151

1L

ZmARF12

2127

708

77.95

7.11

3.08

AC202124

HM004527

umc1690

EU947189

ZmARF13

2553

850

93.13

7.01

4.03

AC197426

HM004528

umc2199

BT069005

ZmARF14

2019

672

74.84

6.25

4.05

AC208514

HM004529

umc1103

EE174911

ZmARF15

2136

711

75.93

7.23

4.06

AC205511

HM004530

bnlg1755

BT087991

ZmARF16

2718

905

100.23

6.10

4.09

AC195460

HM004531

umc1143

EU955385

ZmARF17

1935

644

70.95

6.97

5.03

AC184866

HM004532

umc2352

BT066347

212-219

10La

ZmARF18

2742

913

100.89

6.54

5.03

AC196992

HM004533

umc1315

EE176799

ZmARF19

2151

716

77.51

7.14

5.03

AC207656

HM004534

umc1610

AY105182

ZmARF20

3450

1149

127.47

6.17

5.03

AC194218

HM004535

umc1154

EE290325

ZmARF21

2097

698

74.99

8.26

6. 02

AC197562

HM004536

umc1656

BT083638

ZmARF22

2778

925

102.23

6.44

6. 02

AC195867

HM004537

bnlg2151

CA272068

ZmARF23

2043

680

73.94

6.86

6. 06

AC187896

HM004538

umc1103

BT067427

ZmARF24

2211

736

80.45

7.84

6. 07

AC204859

HM004539

umc1350

AY109838

ZmARF25

2406

801

89.75

6.47

8.06

AC203318

HM004540

umc1161

BT067605

324-366

1L

ZmARF26

2061

686

74.34

7.10

8.09

AC208613

HM004541

umc1638

BT087971

324-366

1L

ZmARF27

3162

1053

116.73

6.67

9.01

AC211017

HM004542

umc2335

CD439516

ZmARF28

2442

813

89.69

7.14

10.03

AC190927

HM004543

umc1863

BT066544

ZmARF29

2838

945

103.82

6.31

10.07

AC201888

HM004544

pco137895

CO441386

411-420

4L

ZmARF30

2430

809

90.30

6.24

10.07

AC200880

HM004545

pco137999

EC901065

411-420

4L

ZmARF31

1389

462

50.55

5.41

10.07

AC190828

HM004546

umc1038

BT067850

411-420

4L


a Systematic designation given to maize ARFs in this work.

b Length of open reading frame in base pairs.

c The number of amino acids, molecular weight (kilodaltons), and isoelectric point (pI) of the deduced polypeptides.

d Location of the ZmARF genes to the Chromosome bins.

e BAC name, DNA accession number where the ZmARF gene is present.

f Nearest marker to the ZmARF gene.

g Representative EST/cDNA in GenBank corresponding to ZmARF gene.

h Location of the ZmARF genes to the physical blocks [32].

I Location of the ZmARF genes to the block pairs [32]. Six ZmARF sister pairs are mapped on the same duplicated chromosomal blocks: ZmARF2 and 17 in 10La, ZmARF3 and 30 in 4L, ZmARF4 and 29 in 4L, ZmARF5 and 31 in 4L, ZmARF10 and 25 in 1L, ZmARF11 and 26 in 1L.

Xing et al. BMC Genomics 2011 12:178   doi:10.1186/1471-2164-12-178

Open Data