Open Access Highly Accessed Research article

Deep sequencing analysis of the developing mouse brain reveals a novel microRNA

King-Hwa Ling123, Peter J Brautigan1, Christopher N Hahn12, Tasman Daish4, John R Rayner1, Pike-See Cheah45, Joy M Raison6, Sandra Piltz4, Jeffrey R Mann7, Deidre M Mattiske7, Paul Q Thomas4, David L Adelson4 and Hamish S Scott12*

Author Affiliations

1 Department of Molecular Pathology, SA Pathology and Centre for Cancer Biology, P.O. Box 14 Rundle Mall Post Office, Adelaide, SA 5000, Australia

2 School of Medicine, Faculty of Health Sciences, University of Adelaide, Adelaide, SA 5005, Australia

3 Department of Obstetrics and Gynaecology, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor DE, Malaysia

4 School of Molecular and Biomedical Science, Faculty of Sciences, University of Adelaide, Adelaide, SA 5005, Australia

5 Department of Human Anatomy, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor DE, Malaysia

6 eResearchSA, University of Adelaide, North Terrace, Adelaide, SA 5005, Australia

7 Theme of Laboratory and Community Genetics, Murdoch Childrens Research Institute, Royal Children's Hospital, Flemington Road, Parkville, VIC 3052, Australia

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BMC Genomics 2011, 12:176  doi:10.1186/1471-2164-12-176

Published: 5 April 2011

Additional files

Additional file 1:

List of 413,494 unique tags.

Format: ZIP Size: 3.3MB Download file

Open Data

Additional file 2:

List of unique tags mapped to repetitive elements and ncRNAs based on the 3' end sequences.

Format: TXT Size: 846KB Download file

Open Data

Additional file 3:

List of unique tags mapped to repetitive elements and ncRNAs based on the 5' end sequences.

Format: TXT Size: 249KB Download file

Open Data

Additional file 4:

List of unique tags mapped to miRNAs, pre-miRNAs or miRNA-star based on 3' end sequences.

Format: TXT Size: 2.7MB Download file

Open Data

Additional file 5:

List of unique tags mapped to RefSeq sequences based on 3' end sequences.

Format: TXT Size: 136KB Download file

Open Data

Additional file 6:

List of unique tags mapped to RefSeq sequences based on 5' end sequences.

Format: TXT Size: 1KB Download file

Open Data

Additional file 7:

List of unique tags mapped to redundant mouse ESTs based on 3' end sequences.

Format: TXT Size: 345KB Download file

Open Data

Additional file 8:

List of unique tags mapped to redundant mouse ESTs based on 5' end sequences.

Format: TXT Size: 43KB Download file

Open Data

Additional file 9:

List of unique tags mapped to a single locus in the mouse genome based on 3' end sequences.

Format: TXT Size: 63KB Download file

Open Data

Additional file 10:

List of unique tags mapped to a single locus in the mouse genome based on 5' end sequences.

Format: TXT Size: 20KB Download file

Open Data

Additional file 11:

List of unique tags mapped to multiple loci in the mouse genome based on 3' end sequences.

Format: TXT Size: 78KB Download file

Open Data

Additional file 12:

List of unique tags mapped to multiple loci in the mouse genome based on 5' end sequences.

Format: TXT Size: 5KB Download file

Open Data

Additional file 13:

List of known miRNAs in the E15.5 developing mouse brain.

Format: XLS Size: 81KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 14:

Supplementary figures and data for statistical analysis.

Format: DOC Size: 1.6MB Download file

This file can be viewed with: Microsoft Word Viewer

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