Table 3

Predicted functions of genes present in 8081 and absent in W22703

Transporter

Gene


copper/silver efflux system

YE3626-YE3630

multidrug efflux protein

YE0443

ABC transporter

YE0801-YE0804; YE0818-YE0821

sugar permease

YE2605-YE2609

phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)

YE1207

glucoside specific PTS system

YE2103-2107

membrane transport protein

YE2029, YE3695

molybdate ABC transporter permease protein

YE2912

cation efflux system

YE3628


Bioenergetic proteins

Gene

sulfite reductase subunit protein

YE1597

NADH:flavin oxidoreductase/NADH oxidase family protein

YE3034


Conjugation/replication

Gene

conjugal transfer protein

YE1177-YE1178

type 4 prepilin-like proteins leader peptide processing enzyme

YE3574

integrating conjugative element protein

YE3484, YE3495

TraG-family protein

YE3493


Metabolism

Gene

chitinase

YE3576

lipase

YE3614

zinc metalloprotease

YE4052

hydrolase

YE0306

dehydrogenase/reductase

YE0341, YE1369-YE1370

aldo/keto reductase

YE3031

oxidoreductase

YE0484

D-serine dehydatase

YE0800

glycerol kinase

YE0824

UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor

YE3066

acetyltransferase

YE1087, YE2245

fucose isomerase fucI

YE0825


Cell wall biogenesis or surface proteins

Gene

adhesin/invasin

YE0694

YGI-2 (putative glycolipoprotein)

YE0894-YE0912

type-1 fimbrial operon

YE1111-YE1114

type-4 pilus

YE3498-YE3506

ysaE (invasin)

YE3549

yadA

YE1873

lipopolysaccharide synthesis

YE3070-3087

lipoprotein

YE0982, YE1234-YE1236, YE1871, YE3483, YE4156

N-acetylglucosamine-binding protein

YE3576 (chiY), YE2830, YE3411, YE3494A

acyl-UDP-N-acetylglucosamine O-acyltransferase, lpxA2

YE2286


Defense mechanism/toxins

Gene

high pathogenicity island HPI (Yersiniabactin)

YE2611-YE2622

HlyA-like hemolysin and transporter (TPS)

YE2407, YE2408

hemolysin

YE3454

hemophore

YE0125-YE0126

heme acquisition system

YE0123-YE0126

T3SS effector protein

YE2447

autotransporter

YE1372, YE2049

ccdA/ccdB, toxin/antitoxin system

YE3480-YE3481; YE2032-2033

bifunctional antitoxin/transcriptional repressor RelB

YE0510, YE0647

arsenic resistance operon

YE3364-YE3366; YE3472-YE3478

metal resistance protein

YE1299

ysa, T3SS

YE3533-YE3561

yst1, T2SS

YE3564-YE3575

iron-sulfur cluster assembly protein

YE1059

metallo-β-lactamase superfamily protein

YE2635

cytonecrosis factor-like toxin

YE2091

actin-ADP-ribosylating toxin

YE0115

antibiotic biosynthesis monooxygenase

YE0340

Rho-activating domain of cytotoxic necrotizing factor

YE2091


Proteins for DNA/RNA regulation and processing

Gene

TCS

YE3561/YE3563; YE3578/YE3579

LuxR family transcription regulatory protein

YE0039, YE0343, YE1026, YE1165, YE2050-YE2051, YE3033

transcriptional regulatory protein

YE0826, YE4110

DNA-binding protein

YE1102, YE1172, YE1825, YE3496A, YE4129

Cro/CI family transcriptional regulator

YE1175A

plasmid-related transcriptional repressor protein

YE1182

GntR-family regulatory protein

YE2670

DNA helicase

YE3514

DEAD-like helicase

YE2632


Others

Gene

YGI-3, putative integrated plasmid

YE0975-YE0993

YGI-4, putative integrated plasmid

YE1170-YE1183

YAPIYe

YE3450-YE3515

prophage region YE98

YE0854-YE0888

prophage region YE185

YE1667-YE1693

prophage region YE200

YE1799-YE1819

prophage region YE250

YE2292-YE2363

zinc-binding protein

YE0683

ATP/GTP-binding protein

YE0986, YE0990, YE3513

plasmid stabilisation protein

YE0510A, YE1110

chromosome partitioning system

YE3515


Fuchs et al. BMC Genomics 2011 12:168   doi:10.1186/1471-2164-12-168

Open Data