Regions of strain W22703 without counterpart in strain 8081. A) contig 1162: manC, mannose-1-phosphate guanylytransferase; manB, phosphomannomutase; galU/galF, UTP-glucose-1-phosphate uridylyltransferase; gmd, probable GDP-mannose 4,6-dehydratase; per, perosamine synthetase; wbcT/U/V/W, glycosyltransferase. contig 1186: ccp, cytochrome c peroxidase; livF, branched chain amino acid transporter; amdS/fmdA, acetamidase/formamidase; dmsA/B/C, anaerobic DMSO reductase; the gene right of YE0815 encodes a putative nitrilase/cyanide hydratase or apolipoprotein N-acyltransferase; gap ~7,100 bp. contig 1240: the gene right of YE1738 encodes a putative O-acetylhomoserine aminocarboxypropyltransferase; gap ~4,230 bp. contig 1764: the gene right of YE4152 encodes a GCN5-related N-acetyltransferase; gap ~39,960 bp. contig 1785: the gene right of YE3852 encodes a putative acyltransferase; hpmB, hemolysin activator; hlyA, hemolysin A; gap ~20,340 bp. contig 1812: pucG, purine catabolism protein (aminotransferase); glnQ, glutamine ABC transporter ATP-binding protein. contig 1835: mqsR, motility quorum-sensing regulator. contig 1878: gne, uridine diphosphatoacetylglucosamine epimerase; wbcK/P/O/N/M/L/K, glycosyltransferase; wzx, lipopolysaccharide O-unit flippase. contig 1884: gaps ~6,960/21,100 bp. contig 1973: kbaY, tagatose-1,6-bisphosphate aldolase; agaS, tagatose-6-phosphate ketose/aldose isomerase; kbaZ, tagatose 6-phosphate kinase. contig 1976: nrfA-D, formate-dependent nitrate reductase, cytochrome c; dsbE, hypothetical thiol:disulfide interchange protein; ccmE, cytochrome C biogenesis protein. Shaded regions: no counterparts were identified in Y. pseudotuberculosis or Y. pestis genomes. The GC-content of the regions is added to the contig number. Asterisk: low-temperature induced gene as identified by luciferase reportering . B) A novel T3SS (ysa2) of strain W22703 YE0311 putatively encodes a two-component response regulator, the gene left of it a multi-sensor hybrid histidine kinase. Different GC contents were determined for the regions left and right of YE0312.
Fuchs et al. BMC Genomics 2011 12:168 doi:10.1186/1471-2164-12-168