Table 3

Stage-specific Pt unigene counts and representation in Pgt

stage

# unique unigenes a

predicted fungal b

# matching Pgt homologs d


counts

normalized c


ptp

961

911

2246

563 (62%)

ptt

801

697

2259

374 (54%)

pte

100

88

818

47 (54%)

ptu

486

369

1131

152 (41%)

ptg

3308

811

811

475 (59%)

ptih

1283

973

2430

292 (30%)


a number of non-redundant sequences obtained from the indicated specific developmental stage only: ptp, pycniospores; ptt, teliospores; pte, a

    e
ciospores; ptu, dormant urediniospores; ptg, germinated urediniospores; ptih, isolated haustoria

b number of unigenes predicted to be fungal

c number of predicted fungal unigenes for that stage was normalized using quality reads in relation to the stage with the highest sampling, ptg (bold type)

d BLASTX search of Pgt genome-predicted proteins at e < 10-5 (percent of actual predicted fungal unigenes)

Xu et al. BMC Genomics 2011 12:161   doi:10.1186/1471-2164-12-161

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