Table 2

Bovine and human mucin genes and protein similarity

Bos taurus

Homo sapiens


Gene

CDS

gDNA

mRNA

Gene

CDS

gDNA

mRNA

%


Membrane-associated mucins

MUC1

FL

NC_007301

NM_174115

MUC1

FL

NC_000001

NM_002456

62.4

MUC3A

3'p

NC_007326

XM_001255602

MUC3A

FL

NC_000007

XM_001725354

12.4

-

MUC3B

FL

AC_000050

XM_001125753

ND

MUC4

5'p

NC_007299

XM_001788490

MUC4

FL

NC_000003

XM_018406

66.6

MUC12

FL

NC_007326

BC142358

MUC12

FL

NC_000007

NM_001164462

68.2

MUC13

FL

NC_007299

XM_865756

MUC13

FL

NC_000003

NM_033049

19.6

MUC15

FL

NC_007313

NM_176631

MUC15

FL

NC_000011

NM_001135091

65.9

MUC16

FL

BN001315

BN001315*

MUC16

FL

NC_000019

NM_024690

57.6

-

MUC17

FL

NC_000007

NM_001040105

ND

MUC20

FL

NC_007299

XM_580797

MUC20

FL

NC_000003

NM_152673

35.5

MUC21

FL

NC_007324

XM_001255727

MUC21

FL

NC_000006

NM_001010909

38.4

Secreted mucins

MUC2

FL

NW_001494549

BN001490*

MUC2

FL

NC_000011

NM_002457

44.8

NW_001027928

MUC5AC

FL

BN001491*

BN001491*

MUC5AC

FL

NC_000011

LT200503**

33.2

MUC5B

FL

BN001492*

BN001492*

MUC5B

FL

NC_000011

NM_002458

23.6

MUC6-1

3'p

NW_001027928

XM_867810

MUC6

FL

NC_000011

NM_005961

61.4

MUC6-2

3'p

NW_001494551

XM_870967

MUC6

FL

NC_000011

NM_005961

34.0

MUC7

3'&5'p

NW_001505809

XM_001255642

MUC7

FL

NC_000004

NM_152291

38.4

-

MUC8

5'p

-

U14383

ND

MUC19

5'p

BN001489*

BN001489*

MUC19

3'p

NC_000012

XM_002343162

64.8

BSM

5'p

NC_007303

XM_615336

MUC19

5'p

NC_000012

XM_002343163

50.7


CDS: coding sequence

gDNA: genomic DNA accession number in GenBank

mRNA: messenger RNA accession number in GenBank

%: percentage amino acid similarity between human and bovine mucin homologue

FL: full length

3'p: 3'partial, 5'p: 5'partial

ND: not determined

* EMBL accession number assigned to the newly generated sequences

** mRNA sequence retrieved from the Mucin Biology Group mucin database [71]

Hoorens et al. BMC Genomics 2011 12:140   doi:10.1186/1471-2164-12-140

Open Data