Table 2 |
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|
Selected list of Fusarium oxysporum f. sp. melonis (FOM) transcripts expressed in melon plants during infection. |
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|
ID |
Bst-Mse |
Length (bp) |
Accessions |
Annotation |
Blast score |
Category |
ISPaVe1070 |
ISPaVe1018 |
ISPaVe1083 |
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|
|
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|
2 dpi |
4 dpi |
8 dpi |
21 dpi |
2 dpi |
4 dpi |
8 dpi |
21 dpi |
2 dpi |
4 dpi |
8 dpi |
21 dpi |
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|
|
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|
TDFs expressed only in planta |
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|
|
||||||||||||||||||
|
P1425 |
TG-CG |
277 |
FOXT_01463 |
hypothetical protein similar to actin binding protein |
3E-76 |
cell component |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
|
P1443 |
TA-CG |
190 |
FOXG_00066 |
dynamin-2 |
6E-76 |
cell component |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P406 |
CC-TT |
479 |
FOXT_05654 |
hypothetical protein similar to 1,4-beta-glucanase |
7E-124 |
cell wall |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
P998 |
CT-TG |
174 |
FOXT_00113 |
chitin synthase 4 |
3E-52 |
cell wall |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1261 |
TG-AT |
209 |
AF080485 |
Fusarium oxysporum f. sp. lycopersici pectate lyase |
2E-87 |
cell wall-degrading |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
2 |
|
P553 |
CT-GT |
235 |
FOXG_09638 |
endo-1,4-beta-xylanase 2 precursor |
7E-101 |
cell wall-degrading |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
P1362 |
TC-GC |
377 |
FOXT_13415 |
endo-1,4-beta-xylanase |
9E-145 |
cell wall-degrading |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
P32 |
TT-AA |
148 |
FOXG_06061 |
squalene synthetase |
1E-42 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P675 |
CG-TT |
259 |
FOXT_08412 |
protein similar to phosphoserine phosphatase |
1E-114 |
signal transduction |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1473 |
TG-AG |
224 |
FOXT_00565 |
hypothetical protein similar to calnexin |
4E-102 |
signal transduction |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P842 |
CT-AA |
382 |
FOXG_03102 |
hypothetical protein similar to MADS box protein |
4E-131 |
signal transduction |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
2 |
0 |
1 |
1 |
2 |
|
P1331 |
TC-CG |
165 |
FVET_00351 |
hypothetical protein similar to vps28 protein |
3E-24 |
transport |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P888 |
TC-TA |
449 |
FOXT_11289 |
plasma membrane ATPase |
1E-178 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1014 |
TT-GA |
140 |
FOXT_12267 |
hypothetical protein similar to hexose transporter |
8E-25 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
P1066 |
CC-GC |
380 |
FOXT_11113 |
mitochondrial phosphate carrier protein |
1E-177 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1232 |
CA-AT |
341 |
FOXT_10521 |
mitochondrial import inner membrane translocase |
1E-63 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P819 |
TC-AC |
359 |
FOXG_09125 |
hypothetical protein similar to avenacinase |
6E-117 |
virulence |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
1 |
|
P1258 |
TG-AT |
468 |
FOXG_09782 |
siderophore iron transporter mirB |
0 |
virulence |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1482 |
TC-TC |
187 |
FOXT_03354 |
hypothetical protein similar to Fum16p |
3E-81 |
virulence |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
|
|
||||||||||||||||||
|
TDFs expressed both in planta and in vitro |
||||||||||||||||||
|
|
||||||||||||||||||
|
P417 |
CC-TT |
168 |
FOXT_11103 |
hypothetical protein similar to sterol esterase precursor |
6E-57 |
lipid metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
P292 |
TT-CG |
180 |
FOXT_00536 |
UTP-glucose-1-phosphate uridylyltransferase |
1E-77 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
2 |
2 |
|
P305 |
CG-CA |
199 |
FOXG_09447 |
pyruvate dehydrogenase E1 component subunit alpha |
2E-88 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
P344 |
CG-CC |
363 |
FOXG_11520 |
NAD-specific glutamate dehydrogenase |
1E-103 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
2 |
|
P1211 |
CA-GC |
159 |
FOXG_10419 |
malate dehydrogenase, mitochondrial precursor |
1,00E-67 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
|
P1333 |
TC-CG |
140 |
FOXT_11398 |
UDP-glucose 6-dehydrogenase |
4,00E-58 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
3 |
|
P1486 |
CC-CA |
226 |
FOXT_07937 |
glutathione reductase |
1E-89 |
metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1280 |
TG-TC |
358 |
FOXT_00266 |
hypothetical protein similar to multiubiquitin |
1E-60 |
protein metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P201 |
TA-TA |
443 |
FOXG_03710 |
hypothetical protein similar to proteasome regulatory |
0 |
protein metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P1398 |
TA-GG |
286 |
FOXT_00231 |
proteasome component C5 |
2E-139 |
protein metabolism |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P304 |
CG-CA |
215 |
FOXT_10713 |
hypothetical protein similar to Ca2+ ATPase |
4E-68 |
signal transduction |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P960 |
CT-TT |
187 |
FOXG_05517 |
cAMP-dependent protein kinase regulatory subunit |
6E-79 |
signal transduction |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P469 |
CT-CA |
294 |
FOXT_12260 |
peroxidase/catalase 2 |
7E-148 |
stress response |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
2 |
|
P1134 |
CG-GG |
352 |
FOXT_01866 |
sorting nexin-41 |
0 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P464 |
CC-TG |
136 |
FOXT_09879 |
hypothetical protein similar to neutral amino acid permease |
8E-40 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
P611 |
CT-GC |
284 |
FOXG_09522 |
hypothetical protein similar to metalloreductase |
1E-139 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
3 |
|
P1293 |
TC-CA |
396 |
FVET_08954 |
hypothetical protein similar to vacuolar sorting protein 35 |
0 |
transport |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P365 |
CG-CG |
426 |
FOXT_12915 |
arginase |
0 |
virulence |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
|
P610 |
CT-GC |
291 |
FOXT_05960 |
hypothetical protein similar to peroxisomal PEX11 |
1E-136 |
virulence |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
1 |
|
|
||||||||||||||||||
|
Selected FOM transcripts identified in infected melon plants, either specifically in planta, or both in planta and in vitro. Identification numbers (ID) correspond to progressive numbering of bands in the gels. The primer combination used to visualize each band (Bst-Mse column) and the corresponding length of the fragment are reported, along with the accession number in the database from which the sequence was retrieved, its annotation, the corresponding blast score and the functional category to which each transcript was assigned. In addition, the table reports the expression profile of each transcript, in each interaction and at each time point, estimated according to band intensity with a score from 1 to 3. |
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|
Sestili et al. BMC Genomics 2011 12:122 doi:10.1186/1471-2164-12-122 |
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