Resolution:
## Figure 1.
HMM logos representing pneumococcal interspersed repeat sequences. These images describe the HMMs used for sequence searches. Each column corresponds
to a nucleotide in the repeat element. The total height of bases in each column represents
how informative that position is in describing the element; the relative heights of
the different bases indicate their respective emission probabilities in the model.
Red shaded columns show positions where base insertions occur: the total width of
these columns represents the expected number of inserted bases, whilst the dark shaded
component indicates the probability that an insertion occurs. The repeats displayed
are a) i) boxA, ii) boxB, iii) boxC, b) RUP and c) SPRITE.
Croucher |