Table 5

Five known copy number differences detected between parental strains using WGS read depth.

Chromosome

Type

No. of 2.5 kb windows

Significant windows (p < 0.001)

Highest Chi-square value


2

Deletion - in both

15

0

3.99

5

Amplification - 7C126

33

33

1212

9

Deletion - in both

52

13

50.6

12

Amplification - 7C126

1

1

85.44

12

Amplification - SC05

64

63

356.03


Read alignment density was consistent with the known CNV alleles except for chromosome 9, where smaller insertions and deletions are detected within a larger shared allele.

Samarakoon et al. BMC Genomics 2011 12:116   doi:10.1186/1471-2164-12-116

Open Data