Table 3

Simple Sequence repeats (SSRs) statistics

di-nucleotide repeat

Number of di-SSRs

%


AG

225

76

AT

60

20

AC

11

4

Total

296

100


tri-nucleotide repeat

Number of tri-SSRs


AAG

699

50

AGC

135

10

ATC

116

8

AGG

99

7

AAT

89

6

Other tri-nucleotide repeats

(% ≤ 6 each one)

AAC, ACC, ACG,CCG, ACT

249

19

Total

1387

100


Tetra-nucleotide repeat

Number of tetra-SSRs

%


AAAT

33

13

AAAG

31

12

AATG

24

10

AATC

21

8

ATCC

18

7

AAAC

17

7

ACAT

16

6

Other tetranucleotide repeats

(% ≤ 6 each one)

ACTC,AACC,AAGG,ACAG,AGGC,AACG,AACT,

92

37

AATT,AGCC,AGCG,AAGC,AGGG,AGAT,ACGG, AGCT,AAGT,ACCC, ACCT

Total

252

100


The number of di-, tri- and tetra-nucleotide repeats identified in the Cucurbita unigene dataset is shown for the complete set of putative SSRs.

Blanca et al. BMC Genomics 2011 12:104   doi:10.1186/1471-2164-12-104

Open Data