Table 3 |
||
|
Simple Sequence repeats (SSRs) statistics |
||
|
di-nucleotide repeat |
Number of di-SSRs |
% |
|
|
||
|
AG |
225 |
76 |
|
AT |
60 |
20 |
|
AC |
11 |
4 |
|
Total |
296 |
100 |
|
|
||
|
tri-nucleotide repeat |
Number of tri-SSRs |
|
|
|
||
|
AAG |
699 |
50 |
|
AGC |
135 |
10 |
|
ATC |
116 |
8 |
|
AGG |
99 |
7 |
|
AAT |
89 |
6 |
|
Other tri-nucleotide repeats |
||
|
(% ≤ 6 each one) |
||
|
AAC, ACC, ACG,CCG, ACT |
249 |
19 |
|
Total |
1387 |
100 |
|
|
||
|
Tetra-nucleotide repeat |
Number of tetra-SSRs |
% |
|
|
||
|
AAAT |
33 |
13 |
|
AAAG |
31 |
12 |
|
AATG |
24 |
10 |
|
AATC |
21 |
8 |
|
ATCC |
18 |
7 |
|
AAAC |
17 |
7 |
|
ACAT |
16 |
6 |
|
Other tetranucleotide repeats |
||
|
(% ≤ 6 each one) |
||
|
ACTC,AACC,AAGG,ACAG,AGGC,AACG,AACT, |
92 |
37 |
|
AATT,AGCC,AGCG,AAGC,AGGG,AGAT,ACGG, AGCT,AAGT,ACCC, ACCT |
||
|
Total |
252 |
100 |
|
|
||
|
The number of di-, tri- and tetra-nucleotide repeats identified in the Cucurbita unigene dataset is shown for the complete set of putative SSRs. |
||
|
Blanca et al. BMC Genomics 2011 12:104 doi:10.1186/1471-2164-12-104 |
||
