Table 3

Search for AS variants by comparison with sequences from public databases.

Presence of alternatively spliced transcripts in databases

No alternatively spliced transcripts in databases


Lib_1

ATP1A1*

CDC42SE1

ATP5A1

CDK5RAP2*

C6orf108

DDB2

CAMK2G

EEF2

CD320

FARS2

CTSH

GABARAP

ELF3

GNB3

FLNA*

GRK6

GAPDH

HDAC2

GNAS

ITGB5*

GNPTAB

MAN2A1

MAN1B1

OSBPL8

NAP1L1

PSMD6

PPIB

PTPRA

RANBP1

188268

RPL28

RBM10*

RPL6

RNF149

RPS4X

ROCK2

SETD2

RPL11

SFRS9*

THSD1

STK25

UQCRC1

Lib_2

ALDH3A2*

ACLY

AOF2*

ASCC3L1

CCNB1

C7orf55

CREB3

COL7A1*

DNAJC10

DDEF1

FN1*

DENND4C

INTS9

GDF9

MYO1C

KIAA0090

RPS2*

KIAA0152

RPS5

MRPL45

SEC61G

PHF19

ST13

PTPLA*

RBMX

SGSM2

SLC4A2

TRIP6*

XPO1

Lib_1 & Lib_2

CLTC*

ATXN10

EIF4A3*

INPP1

GSPT1*

PAIP1

KRT18*

PSMC2*


*ASSETs selected for RT-PCR validation

Ferreira et al. BMC Genomics 2010 11(Suppl 5):S4   doi:10.1186/1471-2164-11-S5-S4

Open Data