Table 5

Comparison of the top 10 ranking predictions with results from other predictors

Rank

ProteRNA

PiRaNhA

Pprint

BindN

PRIP


(a) Rank by MCC


1

2PJP_A

2QAM_Z

2QAM_Z

2QAM_Z

2PY9_C

2

2QAM_Z

2QBE_T

1VS8_O

2PY9_C

2QAM_Z

3

2PY9_C

2DER_B

2PJP_A

1VS8_O

2HYI_D

4

1VS8_O

2G4B_A

2PY9_C

2QBE_T

2NQP_B

5

2G4B_A

1VS8_O

2GYA_3

2G4B_A

2IY5_A

6

2Q66_A

2PY9_C

2DER_B

2DER_B

1VS8_O

7

2I82_C

2G8K_A

2G4B_A

2J0Q_A

2I82_C

8

2DER_B

2OZB_B

2QBE_T

2IPY_B

2V47_C

9

2QBE_T

2V47_C

2DR2_A

2HVR_A

2GJE_A

10

2DR2_A

2GJE_D

2QKK_F

2GTT_G

2JEA_B


MCC of Rank 1

0.6668

0.6415

0.6006

0.4364

0.5521


MCC of Rank 10

0.3063

0.2719

0.2390

0.1951

0.0517


(b) Rank by precision


1

2Q66_A

2GYA_3

2GYA_3

2QAM_Z

2QAM_Z

2

2PJP_A

2QBE_T

2QAM_Z

2QBE_T

2PY9_C

3

2PY9_C

2QAM_Z

2QBE_T

1VS8_O

1VS8_O

4

2QAM_Z

1VS8_O

1VS8_O

2PY9_C

2QBE_T

5

2DER_B

2OZB_B

2PY9_C

2GYA_3

2I82_C

6

1VS8_O

2PY9_C

2DER_B

2G4B_A

2V47_C

7

2GYA_3

2DER_B

2V47_C

2J0Q_A

2IY5_A

8

2I82_C

2V47_C

2I82_C

2I82_C

2GYA_3

9

2QBE_T

2G4B_A

2G4B_A

2DER_B

2G4B_A

10

2G8K_A

2Q66_A

2GJE_A

2V47_C

2GJE_A


Precision of Rank 1

100.00%

100.00%

76.92%

76.47%

75.00%


Precision of Rank 10

50.00%

35.71%

25.00%

24.00%

13.33%


Values in bold indicate listing in the top 10 by at least 5 predictors.

Values in bold and italics indicate listing in the top 10 by at least 4 predictors.

Huang et al. BMC Genomics 2010 11(Suppl 4):S2   doi:10.1186/1471-2164-11-S4-S2

Open Data