Table 3 |
||||||||||||
|
Prediction performance breakdown in terms of the categories of RNA using the training dataset, RB147 |
||||||||||||
|
Predictor |
RNA |
TP |
FP |
TN |
FN |
Sensitivity |
Specificity |
Precision |
Accuracy |
MCC |
F-score |
F0.5-score |
|
|
||||||||||||
|
ProteRNASVM |
rRNA |
2060 |
537 |
5814 |
1856 |
52.60% |
91.54% |
79.32% |
76.69% |
0.4933 |
0.6326 |
0.7201 |
|
mRNA |
27 |
16 |
1606 |
229 |
10.55% |
99.01% |
62.79% |
86.95% |
0.2193 |
0.1806 |
0.3154 |
|
|
tRNA |
234 |
171 |
11000 |
996 |
19.02% |
98.47% |
57.78% |
90.59% |
0.2942 |
0.2862 |
0.4105 |
|
|
others |
109 |
93 |
6930 |
646 |
14.44% |
98.68% |
53.96% |
90.50% |
0.2441 |
0.2278 |
0.3487 |
|
|
|
||||||||||||
|
Total |
2430 |
823 |
25344 |
3727 |
39.47% |
96.86% |
74.70% |
85.92% |
0.4741 |
0.5165 |
0.6338 |
|
|
ProteRNAWildSpan |
rRNA |
554 |
412 |
5939 |
3362 |
14.15% |
93.51% |
57.35% |
63.24% |
0.1274 |
0.2270 |
0.3560 |
|
mRNA |
67 |
121 |
1501 |
189 |
26.17% |
92.54% |
35.64% |
83.49% |
0.2139 |
0.3018 |
0.3323 |
|
|
tRNA |
50 |
173 |
10998 |
1180 |
4.07% |
98.45% |
22.42% |
89.09% |
0.0566 |
0.0688 |
0.1178 |
|
|
others |
85 |
272 |
6751 |
670 |
11.26% |
96.13% |
23.81% |
87.89% |
0.1045 |
0.1529 |
0.1947 |
|
|
|
||||||||||||
|
Total |
756 |
978 |
25189 |
5401 |
12.28% |
96.26% |
43.60% |
80.27% |
0.1489 |
0.1916 |
0.2887 |
|
|
ProteRNA |
rRNA |
2256 |
878 |
5473 |
1660 |
57.61% |
86.18% |
71.98% |
75.28% |
0.4618 |
0.6400 |
0.6856 |
|
mRNA |
89 |
138 |
1484 |
167 |
34.77% |
91.49% |
39.21% |
83.76% |
0.2764 |
0.3685 |
0.3823 |
|
|
tRNA |
238 |
304 |
10867 |
992 |
19.35% |
97.28% |
43.91% |
89.55% |
0.2431 |
0.2686 |
0.3502 |
|
|
others |
177 |
366 |
6657 |
578 |
23.44% |
94.79% |
32.60% |
87.86% |
0.2118 |
0.2727 |
0.3024 |
|
|
Total |
2760 |
1686 |
24481 |
3397 |
44.83% |
93.56% |
62.08% |
84.28% |
0.4376 |
0.5206 |
0.5764 |
|
|
|
||||||||||||
|
Huang et al. BMC Genomics 2010 11(Suppl 4):S2 doi:10.1186/1471-2164-11-S4-S2 |
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