Table 2

The core genome components in six Plasmodium species involved in fundamental cellular processes.

Function description

Examples of GO classes

Orthologous families


Replication

GO:0003688 (DNA replication origin binding)

ORTHOMCL1162

ORTHOMCL2123


GO:0003887 (DNA-directed DNA polymerase activity)

ORTHOMCL2751

ORTHOMCL61

ORTHOMCL2153

ORTHOMCL593

ORTHOMCL2507


GO:0005663 (DNA replication factor C complex)

ORTHOMCL1738

ORTHOMCL1861

ORTHOMCL443

ORTHOMCL513

ORTHOMCL1911

ORTHOMCL2437

ORTHOMCL3328


GO:0005662 (DNA replication factor A complex)

ORTHOMCL683


Transcription

GO:0000122 (negative regulation of transcription from RNA polymerase II promoter)

ORTHOMCL190


GO:0000126 (transcription factor TFIIIB complex)

ORTHOMCL2349

ORTHOMCL802


GO :0016251 (general RNA polymerase II transcription factor activity)

ORTHOMCL2179


GO:0003702 (RNA polymerase II transcription factor activity)

ORTHOMCL1522

ORTHOMCL3420


GO:0003712 (transcription cofactor activity)

ORTHOMCL3015


GO:0003700 (transcription factor activity)

ORTHOMCL1875

ORTHOMCL3398

ORTHOMCL880

ORTHOMCL2851

ORTHOMCL2947


Translation

GO:0006412 (translation)

ORTHOMCL1544

ORTHOMCL3343

ORTHOMCL1471

ORTHOMCL1516

ORTHOMCL1698

ORTHOMCL2550

ORTHOMCL1856


GO:0003743 (translation initiation factor activity)

ORTHOMCL1832

ORTHOMCL1842

ORTHOMCL2705

ORTHOMCL3178

ORTHOMCL2122

ORTHOMCL940

ORTHOMCL3423


GO:0003746 (translation elongation factor activity)

ORTHOMCL350

ORTHOMCL1193

ORTHOMCL2152

ORTHOMCL2232

ORTHOMCL1803

ORTHOMCL516

ORTHOMCL1744


GO:0006449 (regulation of translational termination)

ORTHOMCL2253


Repair

GO:0006289 (nucleotide-excision repair)

ORTHOMCL444


GO:0000724 (double-strand break repair via homologous recombination)

ORTHOMCL1863


GO:0006302 (double-strand break repair)

ORTHOMCL867


GO:0006281 (DNA repair)

ORTHOMCL543

ORTHOMCL1058


Cell motion

GO:0007017 (microtubule-based process)

ORTHOMCL2981

ORTHOMCL1078


GO:0003777 (microtubule motor activity)

ORTHOMCL2241

ORTHOMCL2737


GO:0007018 (microtubule-based movement)

ORTHOMCL1635

ORTHOMCL2737

ORTHOMCL1944


GO:0030048 (actin filament-based movement)

ORTHOMCL278

ORTHOMCL1146

ORTHOMCL428


Cai et al. BMC Genomics 2010 11(Suppl 3):S13   doi:10.1186/1471-2164-11-S3-S13

Open Data