Table 3

Distribution of EPIYA-motif containing proteins at genus and species levels (as of July 6th 2009)

Groups

Number of genuses

Number of species


total

With copies of motif≥1 (%)

With copies of motif≥2 (%)

total

With copies of motif≥1 (%)

With copies of motif≥2 (%)


Archaea

109

49

44.95%

19

17.43%

330

90

27.27%

28

8.48%


Viruses

623

221

35.47%

18

2.89%

6443

433

6.72%

30

0.47%


Bacteria

1198

560

46.74%

209

17.45%

6291

1398

22.22%

360

5.72%


Eukaryota

35499

1828

5.15%

122

0.34%

108654

2725

2.51%

169

0.16%


-Protista

1263

109

8.63%

18

1.43%

3747

186

4.96%

32

0.85%


-Fungi

1509

121

8.02%

40

2.65%

5772

206

3.57%

52

0.90%


-Metazoa

22309

662

2.97%

49

0.22%

62097

826

1.33%

68

0.11%


-Viridiplantae

10418

936

8.98%

15

0.14%

37038

1507

4.07%

17

0.05%


total

37429

2658

7.10%

368

0.98%

121718

4646

3.82%

587

0.48%


Data in this table presents the numbers of genuses/species with proteins containing the EPIYA motif versus total number of genuses/species in NR. The Eukaryota group is divided into protista, fungi, metzoa and viridiplantae.

Xu et al. BMC Genomics 2010 11(Suppl 3):S1   doi:10.1186/1471-2164-11-S3-S1

Open Data