Table 3

Comparison of Cullen et al. dataset motifs to UniPROBE data.

Gene set

SCOPE motifs

UniPROBE match

E-value

Motif coverage


Cullen et al.

cataca

Rap1

7.2E-04

61.5%


Cluster B



Cullen et al.

tttacannnnnnnnnnaca

Fkh1

1.2E-03

35.0%


Cluster C

cgcnnnnnnnatgt

Cup9

2.1E-03

35.0%


atgcatga

Phd1

6.8E-03

35.0%



Cullen et al.

tagnnnnnnnnnatata

Spt15

1.3E-03

91.3%


Cluster E

attcc

Lys14

1.6E-03

100.0%


Martyanov and Gross BMC Genomics 2010 11(Suppl 2):S8   doi:10.1186/1471-2164-11-S2-S8

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