This article is part of the supplement: The 2009 International Conference on Bioinformatics & Computational Biology (BioComp 2009)

Open Access Research

Identifying functional relationships within sets of co-expressed genes by combining upstream regulatory motif analysis and gene expression information

Viktor Martyanov and Robert H Gross*

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA

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BMC Genomics 2010, 11(Suppl 2):S8 doi:10.1186/1471-2164-11-S2-S8

Published: 2 November 2010

Additional files

Additional file 1:

G1-S upregulated. SCOPE output for the set of genes upregulated during G1-S cell cycle transition (Figure 2).

Format: TXT Size: 174KB Download file

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Additional file 2:

G1-S cluster A. SCOPE output for the genes from G1-S cluster A (Figure 3).

Format: TXT Size: 114KB Download file

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Additional file 3:

G1-S cluster B. SCOPE output for the genes from G1-S cluster B (Figure 3).

Format: TXT Size: 80KB Download file

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Additional file 4:

G1-S cluster C. SCOPE output for the genes from G1-S cluster C (Figure 3).

Format: TXT Size: 118KB Download file

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Additional file 5:

G1-CLN2 cluster A. SCOPE output for the genes from G1-CLN2 cluster A.

Format: TXT Size: 64KB Download file

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Additional file 6:

G1-CLN2 cluster B. SCOPE output for the genes from G1-CLN2 cluster B.

Format: TXT Size: 88KB Download file

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Additional file 7:

M-G1 MCM cluster A. SCOPE output for the genes from M-G1 MCM cluster A (Figure 6).

Format: TXT Size: 28KB Download file

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Additional file 8:

M-G1 MCM cluster B. SCOPE output for the genes from M-G1 MCM cluster B (Figure 6).

Format: TXT Size: 34KB Download file

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Additional file 9:

M-G1 MCM cluster C. SCOPE output for the genes from M-G1 MCM cluster C (Figure 6).

Format: TXT Size: 125KB Download file

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Additional file 10:

Cullen cluster A. SCOPE output for the genes from Cullen cluster A (Figure 7).

Format: TXT Size: 163KB Download file

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Additional file 11:

Cullen cluster B. SCOPE output for the genes from Cullen cluster B (Figure 7).

Format: TXT Size: 114KB Download file

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Additional file 12:

Cullen cluster C. SCOPE output for the genes from Cullen cluster C (Figure 7).

Format: TXT Size: 105KB Download file

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Additional file 13:

Cullen cluster D. SCOPE output for the genes from Cullen cluster D (Figure 7).

Format: TXT Size: 98KB Download file

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Additional file 14:

Cullen cluster E. SCOPE output for the genes from Cullen cluster E (Figure 7).

Format: TXT Size: 162KB Download file

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Additional file 15:

Cullen cluster F. SCOPE output for the genes from Cullen cluster F (Figure 7).

Format: TXT Size: 67KB Download file

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