Table 6

The no. of predicted true DEGs using partial samples from condition A and B with or without using DB Pruning. Rp’, Wad’, tTest’, FC’ are algorithms with DB pruning. The total number of true DEGs of the 17 datasets is 284.

K=150

K=250

K=350

K=450

K=550


2x2 samples

Rp/Rp’

45/46

61/61

68/71

78/79

86/92


Fc/Fc’

43/44

58/62

62/71

69/82

74/89


tTest/tTest’

16/32

24/47

31/60

37/77

45/88


Wad/Wad’

92/92

116/116

127/128

140/141

149/149


3x3 samples

Rp/Rp’

52/53

60/64

71/75

76/81

81/90


Fc/Fc’

54/54

61/63

71/77

79/87

90/100


tTest/tTest’

32/52

48/76

62/98

72/115

82/132


Wad/Wad’

91/91

128/129

150/150

166/166

171/175


4x4 samples

Rp/Rp’

60/63

70/74

78/86

85/97

97/105


Fc/Fc’

62/63

74/81

86/92

94/108

115/128


tTest/tTest’

67/85

83/111

100/141

108/157

119/174


Wad/Wad’

119/119

155/155

173/174

189/190

193/196


Hu and Xu BMC Genomics 2010 11(Suppl 2):S3   doi:10.1186/1471-2164-11-S2-S3

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