Table 1

List of methylated proteins and methylation sites discovered by FindMod.

Gene name

Swiss-Prot accession

Description

Methylated residuesa


ARC40

P38328

Actin-related protein 2/3 complex subunit 1

mK121

ATP2

P00830

ATP synthase subunit beta, mitochondrial precursor

mK196

CDC11

P32458

Cell division control protein 11

dR35

DIP2

Q12220

U3 small nucleolar RNA-associated protein 12

mK350

DNF1

P32660

Probable phospholipid-transporting ATPase DNF1

mK541

ECM29

P38737

Proteasome component ECM29

mR542, dR1112

EDE1

P34216

EH domain-containing and endocytosis protein 1

mR252

EMG1

Q06287

Essential for mitotic growth 1

mK147

ERB1

Q04660

Ribosome biogenesis protein ERB1

mK577, mK581

FKS1

P38631

1,3-beta-glucan synthase component FKS1

mR946, dR946, dR952, mR962, dR962, dR1527

GCD10

P41814

tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6

mK436, mR447

GCN1

P33892

Translational activator GCN1

dK1446

GCN20

P43535

Protein GCN20

dK656

GUS1

P46655

Glutamyl-tRNA synthetase, cytoplasmic

mR371

HAS1

Q03532

ATP-dependent RNA helicase HAS1

dK444

IMD3

P50095

Probable inosine-5'-monophosphate dehydrogenase IMD3

mR168

ISW1

P38144

ISWI chromatin-remodeling complex ATPase ISW1

mK14

LEA1

Q08963

U2 small nuclear ribonucleoprotein A'

dR141

MPG1

P41940

Mannose-1-phosphate guanyltransferase

dK299

MRPL17

P36528

54S ribosomal protein L17, mitochondrial precursor

mK70

MRPL20

P22354

54S ribosomal protein L20, mitochondrial precursor

mK104

NIP1

P32497

Eukaryotic translation initiation factor 3 subunit C

mK514

NOC2

P39744

Nucleolar complex protein 2

mK384

NOG2

P53742

Nucleolar GTP-binding protein 2

dR336

NOT1

P25655

General negative regulator of transcription subunit 1

mR256

POL12

P38121

DNA polymerase alpha subunit B

mK84

PRP43

P53131

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

dK662

PRT1

P06103

Eukaryotic translation initiation factor 3 subunit B

mR572

PSD2

P53037

Phosphatidylserine decarboxylase proenzyme 2 precursor

mR252

PYK1

P00549

Pyruvate kinase 1

mR216, dR216

RPA2

P22138

DNA-directed RNA polymerase I subunit RPA2

dK513

RPB2

P08518

DNA-directed RNA polymerase II subunit RPB2

mR496

RPL16A

P26784

60S ribosomal protein L16-A

dK148

RPL18A, RPL18B

P07279

60S ribosomal protein L18

mR105

RPL1A, RPL1B

P53030

60S ribosomal protein L1

dK207

RPL20A, RPL20B

P0C2I0

60S ribosomal protein L20

dK47

RPL27A, RPL27B

P0C2H6, P0C2H7

60S ribosomal protein L27

dR15, dK133

RPL2A, RPL2B

P05736

60S ribosomal protein L2

dR21

RPL3

P14126

60S ribosomal protein L3

mR275, dK384

RPL4A

P10664

60S ribosomal protein L4-A

dR84, mK104

RPL7A

P05737

60S ribosomal protein L7-A

mR218

RPL7B

Q12213

60S ribosomal protein L7-B

mR218

RPL8B

P29453

60S ribosomal protein L8-B

mK15, mK43, dK241

RPN2

P32565

26S proteasome regulatory subunit RPN2

mK376

RPS11A, RPS11B

P26781

40S ribosomal protein S11

mR67

RPS13

P05756

40S ribosomal protein S13

mK140

RPS17A

P02407

40S ribosomal protein S17-A

dK59

RRP5

Q05022

rRNA biogenesis protein RRP5

dR215, dK769

RSC1

P53236

Chromatin structure-remodeling complex subunit RSC1

mR454

RSC30

P38781

Chromatin structure-remodeling complex protein RSC30

mR692

RVB2

Q12464

RuvB-like protein 2

mK412

SKI3

P17883

Superkiller protein 3

dK1088

SMB1

P40018

Small nuclear ribonucleoprotein-associated protein B

mK138, mK145

SNF2

P22082

Transcription regulatory protein SNF2

dK1028

SNU114

P36048

114 kDa U5 small nuclear ribonucleoprotein component

dK356, mK935

SSB1

P11484

Heat shock protein SSB1

dR513

SSB2

P40150

Heat shock protein SSB2

dR513

TDH3

P00359

Glyceraldehyde-3-phosphate dehydrogenase 3

dR11

TIF32

P38249

Eukaryotic translation initiation factor 3 subunit A

dK192

TUB2

P02557

Tubulin beta chain

dR318

URA7

P28274

CTP synthase 1

dK28

USO1

P25386

Intracellular protein transport protein USO1

mK119

UTP22

P53254

U3 small nucleolar RNA-associated protein 22

mK1158

VPS52

P39904

Vacuolar protein sorting-associated protein 52

mR224

YKU70

P32807

ATP-dependent DNA helicase II subunit 1

dR549

YPR097W

Q06839

PX domain-containing protein YPR097W

dK249


a: m, monomethylated; d, dimethylated

Pang et al. BMC Genomics 2010 11:92   doi:10.1186/1471-2164-11-92

Open Data