Table 3

Sequence, copy number and nucleotide identity of the 13 novel RMs

Element

Total copy number

ENV

Linker

3'LTR

Consensus sequence††

Nucleotide identity %

bef. ENV

aft. ENV


Osr10

22 (+1)

Y

12

0

10

    CGGTC
T
    GACCG

92.7

Osr9

20

Y

7

0

13

    TTTTCGGA
CWTR
    TCCGAAAA

88.1

Sorghum

9

Y

4

2

3

    AGGGCGGCA
G
    TGCCGCCCT

80.1

Citrus

12

Y

8

0

4

    AATCCGGC
TW
    RCCGGATT

66.5

HOPIE

21 (+4)

Y

7

0

14

    CGGAC
C
    GTCCG

86.8

Vitis

12

Y

2

0

10

    CGGTCGACCG

87.4

Barbara

26

Y

13

0

13

    TCGGT
CYC
    ACCGA

85.2

Inga

32

Y

18

0

14

    AGCGGTA
S
    TACCGCT

87.4

Usier

18

Y

6

0

12

    GTCGGACGTCCGAC

76.1

OPIE-2

9

N

0

9

    CACCGGAC
T
    GTCCGGTG

100

PREM-2

8

N

0

8

    CACCGGAC
T
    GTCCGGTG

95.5

Osr8

9

N

0

9

    CGGTC
A
    GACCG

85.4

Tnd-1

8

N

0

8

    ACAATCGATTGT

100


The parenthesis includes the additional copies found at the beginning of the ENV-gene. †† The symmetrical subunits of each RM are underlined, revealing the length and composition of the intervening bases.

Bousios et al. BMC Genomics 2010 11:89   doi:10.1186/1471-2164-11-89

Open Data