Table 2 |
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|
Analysis of the Sirevirus genome size, the position and number of PPTs |
||||
|
Element |
Full/Linker/LTR length (kb) † |
PPTs before ENV |
PPTs after ENV |
PPTs in linker domain |
|
|
||||
|
Lotus2 |
12.12/1.68/1.22 |
--- |
4 |
4 |
|
Osr10 |
11.97/2.04/1.56 |
1 |
3 |
4 |
|
Osr9 |
11.63/1.68/1.51 |
--- |
4 |
4 |
|
Sorghum |
12.10/1.79/1.22 |
1 |
3 |
4 |
|
Medicago |
11.93/1.14/1.27 |
--- |
4 |
4 |
|
Citrus |
9.98/1.28/1.16 |
--- |
5 |
5 |
|
Hopie |
11.87/1.37/1.68 |
--- |
3 |
3 |
|
ToRTL1 |
9.68/0.88/0.80 |
--- |
4 |
4 |
|
SIRE1-1 |
9.29/0.52/1.00 |
--- |
5 |
5 |
|
Endovir1-1 |
9.08/1.55/0.54 |
--- |
3 |
3 |
|
Vitis |
9.67/1.10/1.24 |
1 |
3 |
4 |
|
Barbara |
9.90/2.76/1.66 |
1 |
3 |
4 |
|
Maximus |
14.42/3.96/1.41 |
--- |
4 |
4 |
|
Inga |
12.02/1.61/1.43 |
3 |
2 |
5 |
|
Usier |
11.77/1.84/1.57 |
--- |
3 |
3 |
|
ATCOPIA43 |
9.07/1.59/0.56 |
--- |
3 |
3 |
|
Osr7 |
8.92/1.31/1.62 |
5 |
5 |
|
|
Osr8 |
9.21/1.10/1.21 |
3 |
3 |
|
|
Tnd-1†† |
8.45/0.73/1.59 |
4 |
4 |
|
|
OPIE-2 |
8.98/0.79/1.29 |
4 |
4 |
|
|
PREM-2 |
9.43/0.82/1.30 |
5 |
5 |
|
|
Avg of Sireviruses |
10.55/1.50/1.28 |
4/element |
||
|
Avg of classic copia |
5.60/0.078/0.56 |
All elements have 1 PPT in their linker |
||
|
|
||||
|
† For elements that contain the ENV-gene, the linker domain length was calculated by combining the segments before and after the ENV-ORF. †† The 5'LTR of Tnd-1 is incomplete and therefore the full length is calculated based on the 3'LTR. |
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|
Bousios et al. BMC Genomics 2010 11:89 doi:10.1186/1471-2164-11-89 |
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