Table 2

Analysis of the Sirevirus genome size, the position and number of PPTs

Element

Full/Linker/LTR length (kb) †

PPTs before ENV

PPTs after ENV

PPTs in linker domain


Lotus2

12.12/1.68/1.22

---

4

4

Osr10

11.97/2.04/1.56

1

3

4

Osr9

11.63/1.68/1.51

---

4

4

Sorghum

12.10/1.79/1.22

1

3

4

Medicago

11.93/1.14/1.27

---

4

4

Citrus

9.98/1.28/1.16

---

5

5

Hopie

11.87/1.37/1.68

---

3

3

ToRTL1

9.68/0.88/0.80

---

4

4

SIRE1-1

9.29/0.52/1.00

---

5

5

Endovir1-1

9.08/1.55/0.54

---

3

3

Vitis

9.67/1.10/1.24

1

3

4

Barbara

9.90/2.76/1.66

1

3

4

Maximus

14.42/3.96/1.41

---

4

4

Inga

12.02/1.61/1.43

3

2

5

Usier

11.77/1.84/1.57

---

3

3

ATCOPIA43

9.07/1.59/0.56

---

3

3

Osr7

8.92/1.31/1.62

5

5

Osr8

9.21/1.10/1.21

3

3

Tnd-1††

8.45/0.73/1.59

4

4

OPIE-2

8.98/0.79/1.29

4

4

PREM-2

9.43/0.82/1.30

5

5

Avg of Sireviruses

10.55/1.50/1.28

4/element

Avg of classic copia

5.60/0.078/0.56

All elements have 1 PPT in their linker


For elements that contain the ENV-gene, the linker domain length was calculated by combining the segments before and after the ENV-ORF. †† The 5'LTR of Tnd-1 is incomplete and therefore the full length is calculated based on the 3'LTR.

Bousios et al. BMC Genomics 2010 11:89   doi:10.1186/1471-2164-11-89

Open Data