Additional file 2.
Splice sites for a subset of Smed454 sequences mapped onto the Schmidtea mediterranea genome. (Header: GID = Genomic contig IDentifier from WUSLv3.1 genome assembly--including the start and end nucleotide coordinates for the complete match--, CIG=90e contig IDentifier, INTNUM = Intron number within the 90e contig, EXO = splice signals found by exonerate, ORI = sequence orientation--here -1 means that the match was found on the reverse strand of the genomic contig--, CEXO = corrected splice site signals after reverse complementing the genomic sequence when required, ILEN = Intron length in bp, IORI = Intron start--relative to the match coordinates--, IEND = Intron end--relative to the match coordinates--, STRAND, SSSEQ = Splice sites sequences--where a point separates three nucleotides from the 5' and 3' exons, and the three dots in the middle denote intron sequence not shown for clarity--).
Format: TBL Size: 1.3MB Download file
Abril et al. BMC Genomics 2010 11:731 doi:10.1186/1471-2164-11-731